المؤلفون: Durairaj J; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland., Waterhouse AM; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland., Mets T; Institute of Technology, University of Tartu, Tartu, Estonia.; Department of Experimental Medical Science, Lund University, Lund, Sweden., Brodiazhenko T; Institute of Technology, University of Tartu, Tartu, Estonia., Abdullah M; Institute of Technology, University of Tartu, Tartu, Estonia.; Department of Experimental Medical Science, Lund University, Lund, Sweden., Studer G; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland., Tauriello G; Biozentrum, University of Basel, Basel, Switzerland.; SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland., Akdel M; VantAI, New York, NY, USA., Andreeva A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Bateman A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, UK., Tenson T; Institute of Technology, University of Tartu, Tartu, Estonia., Hauryliuk V; Institute of Technology, University of Tartu, Tartu, Estonia.; Department of Experimental Medical Science, Lund University, Lund, Sweden.; Science for Life Laboratory, Lund, Sweden.; Virus Centre, Lund University, Lund, Sweden., Schwede T; Biozentrum, University of Basel, Basel, Switzerland. torsten.schwede@unibas.ch.; SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland. torsten.schwede@unibas.ch., Pereira J; Biozentrum, University of Basel, Basel, Switzerland. joana.pereira@unibas.ch.; SIB Swiss Institute of Bioinformatics, University of Basel, Basel, Switzerland. joana.pereira@unibas.ch.

المصدر: Nature [Nature] 2023 Oct; Vol. 622 (7983), pp. 646-653. Date of Electronic Publication: 2023 Sep 13.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

مواضيع طبية MeSH: Databases, Protein* , Deep Learning* , Molecular Sequence Annotation* , Protein Folding* , Proteins*/chemistry , Proteins*/classification , Proteins*/metabolism , Structural Homology, Protein*, Amino Acid Sequence ; Internet

المؤلفون: Barrio-Hernandez I; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, UK., Yeo J; School of Biological Sciences, Seoul National University, Seoul, South Korea., Jänes J; Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland., Mirdita M; School of Biological Sciences, Seoul National University, Seoul, South Korea., Gilchrist CLM; School of Biological Sciences, Seoul National University, Seoul, South Korea., Wein T; Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel., Varadi M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, UK., Velankar S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Cambridge, UK., Beltrao P; Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland. beltrao@imsb.biol.ethz.ch.; Swiss Institute of Bioinformatics, Lausanne, Switzerland. beltrao@imsb.biol.ethz.ch., Steinegger M; School of Biological Sciences, Seoul National University, Seoul, South Korea. martin.steinegger@snu.ac.kr.; Artificial Intelligence Institute, Seoul National University, Seoul, South Korea. martin.steinegger@snu.ac.kr.; Institute of Molecular Biology and Genetics, Seoul National University, Seoul, South Korea. martin.steinegger@snu.ac.kr.

المصدر: Nature [Nature] 2023 Oct; Vol. 622 (7983), pp. 637-645. Date of Electronic Publication: 2023 Sep 13.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

مواضيع طبية MeSH: Algorithms* , Cluster Analysis* , Proteins*/chemistry , Proteins*/classification , Proteins*/metabolism , Structural Homology, Protein*, Humans ; Databases, Protein ; Sequence Alignment ; Molecular Sequence Annotation ; Prokaryotic Cells/chemistry ; Phylogeny ; Species Specificity ; Evolution, Molecular

المؤلفون: Procházka D; Faculty of Informatics, Masaryk University, Botanická 68A, Brno 60200, Czech Republic., Slanináková T; Faculty of Informatics, Masaryk University, Botanická 68A, Brno 60200, Czech Republic.; Institute of Computer Science, Masaryk University, Šumavská 416/15, Brno 60200, Czech Republic., Olha J; Faculty of Informatics, Masaryk University, Botanická 68A, Brno 60200, Czech Republic.; Institute of Computer Science, Masaryk University, Šumavská 416/15, Brno 60200, Czech Republic., Rošinec A; Institute of Computer Science, Masaryk University, Šumavská 416/15, Brno 60200, Czech Republic.; Biological Data Management and Analysis Core Facility, CEITEC-Central European Institute of Technology, Masaryk University, Studentská, Brno 62500, Czech Republic.; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic., Grešová K; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic., Jánošová M; Faculty of Informatics, Masaryk University, Botanická 68A, Brno 60200, Czech Republic., Čillík J; Institute of Computer Science, Masaryk University, Šumavská 416/15, Brno 60200, Czech Republic., Porubská J; Biological Data Management and Analysis Core Facility, CEITEC-Central European Institute of Technology, Masaryk University, Studentská, Brno 62500, Czech Republic.; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic., Svobodová R; Biological Data Management and Analysis Core Facility, CEITEC-Central European Institute of Technology, Masaryk University, Studentská, Brno 62500, Czech Republic.; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Kamenice 5, Brno 62500, Czech Republic., Dohnal V; Faculty of Informatics, Masaryk University, Botanická 68A, Brno 60200, Czech Republic., Antol M; Faculty of Informatics, Masaryk University, Botanická 68A, Brno 60200, Czech Republic.; Institute of Computer Science, Masaryk University, Šumavská 416/15, Brno 60200, Czech Republic.

المصدر: Nucleic acids research [Nucleic Acids Res] 2024 Jul 05; Vol. 52 (W1), pp. W182-W186.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: Proteome*/chemistry , Proteome*/genetics , Databases, Protein* , Software*, Internet ; Search Engine ; Machine Learning ; Protein Conformation ; Proteins/chemistry ; Proteins/genetics ; Proteins/metabolism ; Protein Folding ; Models, Molecular ; Structural Homology, Protein

المؤلفون: Jia F; State Key Laboratory of Common Mechanism Research for Major Diseases, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100005, China., Shi Y; Chinese Institute for Brain Research, Beijing, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, 102206, China., Yu Y; State Key Laboratory of Common Mechanism Research for Major Diseases, Department of Molecular Biology and Biochemistry, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100005, China. Electronic address: yuy@ibms.pumc.edu.cn.

المصدر: Biochemical and biophysical research communications [Biochem Biophys Res Commun] 2024 Jun 18; Vol. 712-713, pp. 149933. Date of Electronic Publication: 2024 Apr 16.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Elsevier Country of Publication: United States NLM ID: 0372516 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1090-2104 (Electronic) Linking ISSN: 0006291X NLM ISO Abbreviation: Biochem Biophys Res Commun Subsets: MEDLINE

مواضيع طبية MeSH: Poxviridae*/genetics , Poxviridae*/chemistry , Viral Proteins*/chemistry , Viral Proteins*/genetics , Viral Proteins*/metabolism , Protein Domains*, Amino Acid Sequence ; Models, Molecular ; Humans ; Structural Homology, Protein ; Phylogeny ; Transcription Factors/chemistry ; Transcription Factors/genetics ; Transcription Factors/metabolism

المؤلفون: Gardner EC; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, USA., Tramont C; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, USA., Bachanová P; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, USA., Wang C; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, USA., Do H; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, USA., Boutz DR; Antibody Discovery and Accelerated Protein Therapeutics, Department of Pathology & Genomic Medicine, Houston Methodist Research Institute, Houston, Texas, USA., Kar S; Antibody Discovery and Accelerated Protein Therapeutics, Department of Pathology & Genomic Medicine, Houston Methodist Research Institute, Houston, Texas, USA., Zemelman BV; Department of Neuroscience, Center for Learning and Memory, The University of Texas at Austin, Austin, Texas, USA. Electronic address: zemelmanb@mail.clm.utexas.edu., Gollihar JD; Antibody Discovery and Accelerated Protein Therapeutics, Department of Pathology & Genomic Medicine, Houston Methodist Research Institute, Houston, Texas, USA. Electronic address: jgollihar2@houstonmethodist.org., Ellington AD; Department of Molecular Biosciences, Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas, USA. Electronic address: ellingtonlab@gmail.com.

المصدر: The Journal of biological chemistry [J Biol Chem] 2024 May; Vol. 300 (5), pp. 107248. Date of Electronic Publication: 2024 Mar 29.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier Inc. on behalf of American Society for Biochemistry and Molecular Biology Country of Publication: United States NLM ID: 2985121R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1083-351X (Electronic) Linking ISSN: 00219258 NLM ISO Abbreviation: J Biol Chem Subsets: MEDLINE

مواضيع طبية MeSH: Receptors, Purinergic P2X2*/metabolism , Receptors, Purinergic P2X2*/genetics , Saccharomyces cerevisiae*/metabolism , Saccharomyces cerevisiae*/genetics, Humans ; Amino Acid Substitution ; Ligands ; Protein Engineering/methods ; Models, Molecular ; Protein Structure, Tertiary ; Protein Structure, Quaternary ; Structural Homology, Protein ; Mutation

المؤلفون: Dapkūnas J; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Olechnovič K; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Venclovas Č; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania.

المصدر: Proteins [Proteins] 2021 Dec; Vol. 89 (12), pp. 1834-1843. Date of Electronic Publication: 2021 Jul 05.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

مواضيع طبية MeSH: Models, Molecular* , Protein Conformation* , Proteins*/chemistry , Proteins*/metabolism , Software* , Structural Homology, Protein*, Binding Sites ; Computational Biology ; Molecular Docking Simulation ; Protein Interaction Domains and Motifs ; Sequence Analysis, Protein

المؤلفون: Shen T; Tencent AI Lab, Shenzhen, China., Wu J; Tencent AI Lab, Shenzhen, China., Lan H; Tencent AI Lab, Shenzhen, China., Zheng L; Tencent AI Lab, Shenzhen, China., Pei J; Tencent AI Lab, Shenzhen, China., Wang S; Tencent AI Lab, Shenzhen, China., Liu W; Tencent AI Lab, Shenzhen, China., Huang J; Tencent AI Lab, Shenzhen, China.

المصدر: Proteins [Proteins] 2021 Dec; Vol. 89 (12), pp. 1901-1910. Date of Electronic Publication: 2021 Sep 23.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

مواضيع طبية MeSH: Neural Networks, Computer* , Protein Folding* , Proteins*/chemistry , Proteins*/metabolism , Software* , Structural Homology, Protein*, Computational Biology ; Models, Molecular ; Reproducibility of Results ; Sequence Analysis, Protein

المؤلفون: Kodali P; Department of Chemistry, Vanderbilt University, Nashville, Tennessee, USA.; Center of Structural Biology, Vanderbilt University, Nashville, Tennessee, USA., Schoeder CT; Department of Chemistry, Vanderbilt University, Nashville, Tennessee, USA.; Center of Structural Biology, Vanderbilt University, Nashville, Tennessee, USA., Schmitz S; Department of Chemistry, Vanderbilt University, Nashville, Tennessee, USA.; Center of Structural Biology, Vanderbilt University, Nashville, Tennessee, USA., Crowe JE , Jr; Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA.; Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, USA.; Departments of Pediatrics, Vanderbilt University Medical Center, Nashville, Tennessee, USA., Meiler J; Department of Chemistry, Vanderbilt University, Nashville, Tennessee, USA.; Center of Structural Biology, Vanderbilt University, Nashville, Tennessee, USA.; Institute for Drug Discovery, University Leipzig Medical School, Leipzig, Germany.

المصدر: Proteins [Proteins] 2021 Nov; Vol. 89 (11), pp. 1458-1472. Date of Electronic Publication: 2021 Jul 07.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

مواضيع طبية MeSH: Algorithms* , Software* , Structural Homology, Protein*, Antibodies/*chemistry , Antigens/*chemistry, Antibodies/immunology ; Antigen-Antibody Complex ; Antigens/immunology ; Benchmarking ; Databases, Protein ; Humans ; Molecular Docking Simulation ; Molecular Dynamics Simulation ; Protein Conformation

المؤلفون: Davidson RB; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, United States., Coletti M; Computer Science and Mathematics Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, United States., Gao M; Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, United States., Piatkowski B; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, United States., Sreedasyam A; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States., Quadir F; Electrical Engineering and Computer Science, University of Missouri, Columbia, MS 65211, United States., Weston DJ; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, United States., Schmutz J; Genome Sequencing Center, HudsonAlpha Institute for Biotechnology, Huntsville, AL 35806, United States.; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, United States., Cheng J; Electrical Engineering and Computer Science, University of Missouri, Columbia, MS 65211, United States., Skolnick J; Center for the Study of Systems Biology, School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, United States., Parks JM; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, United States., Sedova A; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, United States.

المصدر: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Aug 01; Vol. 39 (8).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: Sphagnopsida*/chemistry , Sphagnopsida*/enzymology , Proteome* , Plant Proteins*/chemistry, Workflow ; Structural Homology, Protein

المؤلفون: Gao Y; School of Mathematical Sciences, Dalian University of Technology, Dalian, China., Lei F; School of Mathematical Sciences, Dalian University of Technology, Dalian, China., Li SX; School of Mathematical Sciences, Dalian University of Technology, Dalian, China.

المصدر: Proteins [Proteins] 2021 Apr; Vol. 89 (4), pp. 409-415. Date of Electronic Publication: 2020 Dec 07.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

مواضيع طبية MeSH: Amyloid beta-Peptides*/chemistry , Amyloid beta-Peptides*/metabolism , Peptide Fragments*/chemistry , Peptide Fragments*/metabolism , Structural Homology, Protein*, Databases, Protein ; Molecular Dynamics Simulation ; Principal Component Analysis ; Protein Conformation ; Protein Folding ; Thermodynamics