المؤلفون: Michael Tisza, Sara Javornik Cregeen, Vasanthi Avadhanula, Ping Zhang, Tulin Ayvaz, Karen Feliz, Kristi L. Hoffman, Justin R. Clark, Austen Terwilliger, Matthew C. Ross, Juwan Cormier, Hannah Moreno, Li Wang, Katelyn Payne, David Henke, Catherine Troisi, Fuqing Wu, Janelle Rios, Jennifer Deegan, Blake Hansen, John Balliew, Anna Gitter, Kehe Zhang, Runze Li, Cici X. Bauer, Kristina D. Mena, Pedro A. Piedra, Joseph F. Petrosino, Eric Boerwinkle, Anthony W. Maresso

المصدر: Nature Communications, Vol 14, Iss 1, Pp 1-10 (2023)

مصطلحات موضوعية: Science

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2041-1723

URL الوصول: https://doaj.org/article/7e65f61faade4b908ae3aa9d4d2302c7

المؤلفون: Lara Bull-Otterson, Wenke Feng, Irina Kirpich, Yuhua Wang, Xiang Qin, Yanlong Liu, Leila Gobejishvili, Swati Joshi-Barve, Tulin Ayvaz, Joseph Petrosino, Maiying Kong, David Barker, Craig McClain, Shirish Barve

المصدر: PLoS ONE, Vol 8, Iss 1, p e53028 (2013)

مصطلحات موضوعية: Medicine, Science

وصف الملف: electronic resource

Relation: http://europepmc.org/articles/PMC3541399?pdf=render; https://doaj.org/toc/1932-6203

URL الوصول: https://doaj.org/article/1dbed6bdd7e640719b695c7f80ec52e6

المؤلفون: Michael Tisza, Sara Javornik Cregeen, Vasanthi Avadhanula, Ping Zhang, Tulin Ayvaz, Karen Feliz, Kristi L. Hoffman, Justin R. Clark, Austen Terwilliger, Matthew C. Ross, Juwan Cormier, David Henke, Catherine Troisi, Fuqing Wu, Janelle Rios, Jennifer Deegan, Blake Hansen, John Balliew, Anna Gitter, Kehe Zhang, Runze Li, Cici X. Bauer, Kristina D. Mena, Pedro A. Piedra, Joseph F. Petrosino, Eric Boerwinkle, Anthony W. Maresso

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::f93d07edac17a2e0cc1f8eb474fb5ffe
https://doi.org/10.1101/2023.05.03.23289441

المؤلفون: Rosamond Rhodes, Asif T. Chinwalla, Tessa Madden, Ashlee M. Earl, Maria C. Rivera, Candace N. Farmer, Jonathan M. Goldberg, Karthik Kota, Victor Felix, Nicholas B. King, Shibu Yooseph, Erica Sodergren, Monika Bihan, Martin J. Blaser, Dirk Gevers, Dan Knights, Pamela Sankar, Anup Mahurkar, Heather Huot Creasy, Veena Bhonagiri, Thomas M. Schmidt, Curtis Huttenhower, Mina Rho, Todd J. Treangen, Thomas J. Sharpton, I. Min A. Chen, Bo Liu, Sarah K. Highlander, Catherine C. Davis, Susan M. Huse, Richard A. Gibbs, Noam J. Davidovics, Patricio S. La Rosa, Carsten Russ, Wesley C. Warren, Richard K. Wilson, Patrick Minx, Jean E. McEwen, Alyxandria M. Schubert, Scott Anderson, Bonnie P. Youmans, Jamison McCorrison, Kathie A. Mihindukulasuriya, Vandita Joshi, Peter J. Mannon, Brandi L. Cantarel, Joseph F. Petrosino, Jack D. Sobel, Chandri Yandava, Sharvari Gujja, Janet K. Jansson, David J. Dooling, Daniel McDonald, Rob Knight, Granger G. Sutton, Gary C. Armitage, Larry J. Forney, Robert S. Fulton, Yuan Qing Wu, Jonathan Crabtree, Susan Kinder-Haake, Lu Wang, Liang Ye, Victor M. Markowitz, Narmada Shenoy, Elizabeth A. Lobos, Ruth M. Farrell, Tatiana A. Vishnivetskaya, Patrick S. G. Chain, Jacques Ravel, Katherine H. Huang, Sergey Koren, Yan Ding, Christina Giblin, Jason R. Miller, Michelle G. Giglio, Gina A. Simone, Chad Nusbaum, Lynn M. Schriml, Matthew C. Ross, Daniel D. Sommer, Sandra L. Lee, Theresa A. Hepburn, Michael Holder, Shaila Chhibba, Patrick D. Schloss, Omry Koren, Lan Zhang, Catrina Fronick, Richard R. Sharp, Diana Tabbaa, Yuzhen Ye, Dennis C. Friedrich, Christie Kovar, Owen White, A. Scott Durkin, Michael Feldgarden, Gary L. Andersen, Makedonka Mitreva, Todd Wylie, Nihar U. Sheth, Sheila Fisher, John Martin, Jose C. Clemente, Xiang Qin, James Versalovic, Dana A. Busam, Bruce W. Birren, Jeremy Zucker, Yu-Hui Rogers, Shannon Dugan, Kristine M. Wylie, Katherine P. Lemon, Floyd E. Dewhirst, Nicola Segata, Konstantinos Liolios, Anthony A. Fodor, Elizabeth L. Appelbaum, Ramana Madupu, W. Michael Dunne, Katherine S. Pollard, Leslie Foster, Olukemi O. Abolude, Yue Liu, Nikos C. Kyrpides, Christopher Wellington, Yanjiao Zhou, Lita M. Proctor, Tsegahiwot Belachew, Mircea Podar, Julia A. Segre, Holli A. Hamilton, Aye Wollam, Paul Spicer, Lei Chen, Sarah Young, Beltran Rodriguez-Mueller, Todd Z. DeSantis, Sean M. Sykes, Toby Bloom, Kelvin Li, Shane Canon, Catherine Jordan, Manolito Torralba, Brandi Herter, R. Dwayne Lunsford, Krishna Palaniappan, Jeroen Raes, Hongyu Gao, Barbara A. Methé, Kjersti Aagaard, Amy L. McGuire, Jonathan Friedman, Matthew D. Pearson, Jason Walker, Mary A. Cutting, Jonathan H. Badger, Diane E. Hoffmann, Tulin Ayvaz, Michael Fitzgerald, Brian J. Haas, Ravi Sanka, Doyle V. Ward, Kris A. Wetterstrand, Mark A. Watson, Christopher Smillie, Lucinda Fulton, Zhengyuan Wang, Lisa Begg, James R. White, Konstantinos Mavrommatis, Lucia Alvarado, Pamela McInnes, Emily L. Harris, Harindra Arachchi, Craig Pohl, Catherine A. Lozupone, Ruth E. Ley, Clinton Howarth, Yiming Zhu, Huaiyang Jiang, Gregory A. Buck, Carl C. Baker, Kimberley D. Delehaunty, Cristyn Kells, Katarzyna Wilczek-Boney, Kim C. Worley, Cesar Arze, J. Fah Sathirapongsasuti, Carolyn Deal, Sandra W. Clifton, Ken Chu, Rachel L. Erlich, Elaine R. Mardis, Cecil M. Lewis, Niall Lennon, Margaret Priest, Scott T. Kelley, Kymberlie Hallsworth-Pepin, Jane Peterson, Allison D. Griggs, Michelle O'Laughlin, Heidi H. Kong, Joshua Orvis, Maria Y. Giovanni, Sahar Abubucker, Dawn Ciulla, Sean Conlan, Chien Chi Lo, Antonio Gonzalez, Georgia Giannoukos, Jennifer R. Wortman, Paul Brooks, Jacques Izard, Chad Tomlinson, Donna M. Muzny, Shital M. Patel, Eric J. Alm, George M. Weinstock, Irene Newsham, Jeffrey G. Reid, Karoline Faust, Qiandong Zeng, Elena Deych, Nathalia Garcia, Mathangi Thiagarajan, James A. Katancik, Vivien Bonazzi, Robert C. Edgar, Christian J. Buhay, Indresh Singh, Johannes B. Goll, Ioanna Pagani, Vincent Magrini, Wendy A. Keitel, Emma Allen-Vercoe, Teena Mehta, Jeffery A. Schloss, William D. Shannon, Mihai Pop, Matthew B. Scholz, Valentina Di Francesco, Rebecca Truty, Karen E. Nelson, Kevin Riehle, Lora Lewis, Joseph L. Campbell, Laurie Zoloth

المساهمون: Massachusetts Institute of Technology. Computational and Systems Biology Program, Massachusetts Institute of Technology. Department of Biological Engineering, Massachusetts Institute of Technology. Department of Civil and Environmental Engineering, Friedman, Jonathan, Smillie, Chris Scott, Alm, Eric J.

المصدر: Nature
PubMed Central

مصطلحات موضوعية: Adult, Male, Adolescent, Statistics as Topic, Population, Computational biology, Biology, Genome, Article, Young Adult, 03 medical and health sciences, Human health, 0302 clinical medicine, RNA, Ribosomal, 16S, Humans, Microbiome, education, 030304 developmental biology, Genetics, 0303 health sciences, education.field_of_study, Multidisciplinary, Bacteria, Human microbiome, Reference Standards, Metagenomics, 030220 oncology & carcinogenesis, Earth Microbiome Project, Metagenome, Female, Human Microbiome Project

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::743da601f2767f68f0580b85d723fa0a
http://europepmc.org/articles/PMC3377744

المؤلفون: Jeanine M. Pennington, Timothy Palzkill, Wanzhi Huang, Tulin Ayvaz, Nicholas G. Brown

المصدر: Journal of Molecular Biology. 404:832-846

مصطلحات موضوعية: Models, Molecular, Mutant, Mutation, Missense, medicine.disease_cause, Article, beta-Lactamases, Evolution, Molecular, Suppression, Genetic, Protein structure, Structural Biology, Enzyme Stability, Escherichia coli, medicine, Molecular Biology, chemistry.chemical_classification, Genetics, Mutation, biology, Protein Stability, Temperature, Active site, Anti-Bacterial Agents, Protein Structure, Tertiary, Amino acid, Enzyme, Amino Acid Substitution, chemistry, Biochemistry, biology.protein, Ampicillin, Function (biology)

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::470726567635c8024aa742285fed3ee5
https://doi.org/10.1016/j.jmb.2010.10.008

المؤلفون: Susan Sharma, Johnny A. Davis, Tulin Ayvaz, Beth Traxler, Amy L. Davidson

المصدر: Journal of Bacteriology. 187:2908-2911

مصطلحات موضوعية: Monosaccharide Transport Proteins, Escherichia coli Proteins, biology, Transporter, Maltose, biology.organism_classification, medicine.disease_cause, Enzymes and Proteins, Microbiology, Enterobacteriaceae, chemistry.chemical_compound, Biochemistry, chemistry, Solubilization, Escherichia coli, medicine, ATP-Binding Cassette Transporters, Molecular Biology, Bacteria

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::71534fce3714b8e026fc88d64183bac2
https://doi.org/10.1128/jb.187.8.2908-2911.2005

المؤلفون: Amy L. Davidson, Susmita Samanta, Howard A. Shuman, Moriama Reyes, Jue Chen, Tulin Ayvaz

المصدر: Journal of Biological Chemistry. 278:35265-35271

مصطلحات موضوعية: Models, Molecular, Monosaccharide Transport Proteins, Protein Conformation, Stereochemistry, Dimer, ATP-binding cassette transporter, Biochemistry, Protein Structure, Secondary, chemistry.chemical_compound, Bacterial Proteins, ATP hydrolysis, Nucleotide, Disulfides, Maltose, Molecular Biology, DNA Primers, Adenosine Triphosphatases, chemistry.chemical_classification, Base Sequence, Escherichia coli Proteins, Walker motifs, Cell Biology, Protein Subunits, A-site, chemistry, Mutagenesis, Site-Directed, ATP-Binding Cassette Transporters, Maltose transport complex, Plasmids, Cysteine

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bfd1c407e18c9e153609dc7e56245f56
https://doi.org/10.1074/jbc.m301171200

المؤلفون: Yanlong Liu, David F. Barker, Wenke Feng, Joseph F. Petrosino, Yuhua Wang, Tulin Ayvaz, Lara M. Bull-Otterson, Swati Joshi-Barve, Shirish Barve, Maiying Kong, Xiang Qin, Irina A. Kirpich, Craig J. McClain, Leila Gobejishvili

المصدر: PLoS ONE, Vol 8, Iss 1, p e53028 (2013)
PLoS ONE

مصطلحات موضوعية: Male, Alcoholic liver disease, Mouse, Alcoholic Liver Disease, Gene Expression, lcsh:Medicine, law.invention, Probiotic, Feces, Mice, 0302 clinical medicine, Intestinal mucosa, law, RNA, Ribosomal, 16S, Claudin-1, Intestinal Mucosa, lcsh:Science, 2. Zero hunger, 0303 health sciences, Multidisciplinary, biology, Ecology, Lacticaseibacillus rhamnosus, Reverse Transcriptase Polymerase Chain Reaction, Liver Diseases, Microbial Growth and Development, Biodiversity, Animal Models, Hydrogen-Ion Concentration, Biota, 3. Good health, Intestines, Medicine, 030211 gastroenterology & hepatology, Public Health, Alcohol, Research Article, Firmicutes, Gastroenterology and Hepatology, Microbiology, Microbial Ecology, 03 medical and health sciences, Model Organisms, Lactobacillus rhamnosus, Species Specificity, medicine, Animals, Microbiome, Liver Diseases, Alcoholic, Biology, 030304 developmental biology, Intestinal permeability, Bacteria, Ethanol, Probiotics, lcsh:R, Genetic Variation, Sequence Analysis, DNA, biology.organism_classification, medicine.disease, Mice, Inbred C57BL, Anti-Infective Agents, Local, Zonula Occludens-1 Protein, Metagenome, lcsh:Q, Metagenomics, Dysbiosis

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c402b16aaf4f077f8f049025300791c0
http://europepmc.org/articles/PMC3541399?pdf=render

المؤلفون: Michael Feldgarden, Shibu Yooseph, Divya Kalra, Theresa A. Hepburn, Navjeet Singh, Richard A. Gibbs, Shawn Leonard, Richard K. Wilson, Elizabeth L. Appelbaum, Niall J. Lennon, Hongyu Gao, Kathie A. Mihindukulasuriya, Bonnie P. Youmans, Lynn K. Carmichael, Yue Shang, Xiang Qin, Ashlee M. Earl, George M. Weinstock, Candace N. Farmer, Scott Anderson, Yu Hui A. Rogers, Erica Sodergren, Otis Hall, Georgia Giannoukos, Joseph F. Petrosino, Brian J. Haas, Todd Z. DeSantis, Kim C. Worley, Michelle O'Laughlin, Craig Pohl, Dawn Ciulla, Matthew C. Ross, Bruce W. Birren, Patrick D. Schloss, Rachel L. Erlich, Lucinda Fulton, Yanjiao Zhou, David J. Dooling, Toby Bloom, Donna M. Muzny, Katarzyna Wilczek-Boney, Leigh Aird, Sarah K. Highlander, Kelvin Li, Elaine R. Mardis, Dirk Gevers, Doyle V. Ward, Vincent Magrini, Keenan Ross, Vandita Joshi, Tulin Ayvaz, John Gill, Christie Kovar, Diana Tabbaa, Susanna Hamilton, Karen E. Nelson, Lora Lewis, Robert S. Fulton, Lisa Hemphill, Jonathan Crabtree, Cesar Arze, Jennifer R. Wortman, Barbara A. Methé, Cristyn Kells, Edward A. Belter, Laura Courtney, Monika Bihan

المصدر: PLoS ONE, Vol 7, Iss 6, p e39315 (2012)
PLoS ONE

مصطلحات موضوعية: Ecological Metrics, lcsh:Medicine, Computational biology, Biology, Biochemistry, Microbiology, Microbial Ecology, 03 medical and health sciences, DNA amplification, RNA, Ribosomal, 16S, Humans, Profiling (information science), Genome Sequencing, lcsh:Science, 030304 developmental biology, 0303 health sciences, Multidisciplinary, Bacteria, Ecology, 030306 microbiology, Bacterial Taxonomy, lcsh:R, Human microbiome, Computational Biology, Bayes Theorem, Species Diversity, Bacteriology, DNA, Genomics, Biodiversity, 16S ribosomal RNA, 3. Good health, Nucleic acids, Earth Microbiome Project, Metagenome, lcsh:Q, Metagenomics, Species Richness, Research Article, Human Microbiome Project

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d609e0dcbc2011d3e0914f76865a5da3
http://europepmc.org/articles/PMC3374619?pdf=render

المؤلفون: Catherine A. Lozupone, Paul Spicer, Margaret Priest, Todd J. Treangen, Niall J. Lennon, Thomas M. Schmidt, Sandra W. Clifton, Ken Chu, Vandita Joshi, Catherine C. Davis, Omry Koren, Yuanqing Wu, Christie Kovar, Jonathan Friedman, Matthew D. Pearson, Scott T. Kelley, Brandi L. Cantarel, Patrick S. G. Chain, Chad Nusbaum, Jonathan Crabtree, Lu Wang, Bonnie P. Youmans, James A. Katancik, George M. Weinstock, Granger G. Sutton, Lisa Begg, Candace N. Farmer, Victor Felix, Barbara A. Methé, Elena Deych, Martin J. Blaser, Amy L. McGuire, Pamela McInnes, Xiang Qin, James Versalovic, James R. White, Yan Ding, Christian J. Buhay, Jason R. Miller, Susan M. Huse, Wm. Michael Dunne, Vivien Bonazzi, Jeremy Zucker, Ioanna Pagani, Robert C. Edgar, Dana A. Busam, Gina A. Simone, Michael Feldgarden, Vincent Magrini, Richard A. Gibbs, Noam J. Davidovics, Indresh Singh, Lucinda Fulton, Lucia Alvarado, Rob Knight, Emma Allen-Vercoe, Teena Mehta, Patricio S. La Rosa, Carsten Russ, Joshua Orvis, Sahar Abubucker, Jacques Ravel, Richard R. Sharp, Dirk Gevers, Wesley C. Warren, Pamela Sankar, Chad Tomlinson, Donna M. Muzny, Jean E. McEwen, Nihar U. Sheth, Sheila Fisher, Katherine H. Huang, Dennis C. Friedrich, Gary C. Armitage, John Martin, Richard K. Wilson, Katarzyna Wilczek-Boney, Catrina Fronick, Patrick Minx, Rebecca Truty, William D. Shannon, Matthew B. Scholz, Kris A. Wetterstrand, Maria Y. Giovanni, Katherine P. Lemon, Floyd E. Dewhirst, Shaila Chhibba, Anthony A. Fodor, Lan Zhang, Patrick D. Schloss, Lynn M. Schriml, Doyle V. Ward, Diana Tabbaa, Jose C. Clemente, Larry J. Forney, Kimberley D. Delehaunty, Cesar Arze, Sharvari Gujja, Lita M. Proctor, Christopher Smillie, Elizabeth L. Appelbaum, Konstantinos Liolios, Chandri Yandava, David J. Dooling, Emily L. Harris, Katherine S. Pollard, Clinton Howarth, Tatiana A. Vishnivetskaya, Sarah Young, Huaiyang Jiang, Karoline Faust, Janet K. Jansson, Kymberlie Hallsworth-Pepin, Owen White, Thomas J. Sharpton, Yiming Zhu, Yanjiao Zhou, Julia A. Segre, Jason Walker, Heidi H. Kong, Toby Bloom, Mathangi Thiagarajan, Tulin Ayvaz, I. Min A. Chen, Bo Liu, Kim C. Worley, Jennifer R. Wortman, Susan Kinder Haake, Manolito Torralba, Makedonka Mitreva, Kjersti Aagaard, J. Fah Sathirapongsasuti, Carolyn Deal, Jeroen Raes, Olukemi O. Abolude, Yue Liu, Rachel L. Erlich, Gary L. Andersen, Nicola Segata, Christopher Wellington, Todd Wylie, Kristine M. Wylie, Tsegahiwot Belachew, Jonathan H. Badger, Mark A. Watson, Aye Wollam, Zhengyuan Wang, Michelle G. Giglio, Kelvin Li, Diane E. Hoffmann, Cristyn Kells, Daniel D. Sommer, Victor M. Markowitz, Chien Chi Lo, Karen E. Nelson, Brian J. Haas, Ruth M. Farrell, Craig Pohl, Harindra Arachchi, Nicholas B. King, Gregory A. Buck, Konstantinos Mavromatis, Qiandong Zeng, Krishna Palaniappan, Kathie A. Mihindukulasuriya, Dan Knights, Anup Mahurkar, Nathalia Garcia, Mary A. Cutting, Theresa A. Hepburn, Mina Rho, Catherine Jordan, Christina Giblin, Dawn Ciulla, Shital M. Patel, Eric J. Alm, Kevin Riehle, Irene Newsham, Sarah K. Highlander, Jamison McCorrison, Nikos C. Kyrpides, Mircea Podar, Beltran Rodriguez-Mueller, Lora Lewis, Robert S. Fulton, Yuzhen Ye, Joseph L. Campbell, Laurie Zoloth, R. Dwayne Lunsford, Ramana Madupu, A. Scott Durkin, Maria C. Rivera, Sergey Koren, Shibu Yooseph, Ruth E. Ley, Erica Sodergren, Cecil M. Lewis, Heather Huot Creasy, Joseph F. Petrosino, Jacques Izard, Jack D. Sobel, J. Paul Brooks, Jeffrey G. Reid, Antonio Gonzalez, Narmada Shenoy, Elizabeth A. Lobos, Georgia Giannoukos, Matthew C. Ross, Allison D. Griggs, Yu-Hui Rogers, Leslie Foster, Wendy A. Keitel, Lei Chen, Alyxandria M. Schubert, Scott Anderson, Peter J. Mannon, Shane Canon, Hongyu Gao, Mihai Pop, Holli A. Hamilton, Tessa Madden, Michelle Oglaughlin, Karthik Kota, Monika Bihan, Veena Bhonagiri, Michael Holder, Daniel McDonald, Liang Ye, Sandra L. Lee, Rosamond Rhodes, Asif T. Chinwalla, Ashlee M. Earl, Shannon Dugan, Sean Conlan, Johannes B. Goll, Jonathan M. Goldberg, Valentina Di Francesco, Curtis Huttenhower, Brandi Herter, Todd Z. DeSantis, Sean M. Sykes, Michael Fitzgerald, Elaine R. Mardis, Jane Peterson, Bruce W. Birren, Ravi Sanka, Carl C. Baker, Jeffery A. Schloss

المساهمون: Massachusetts Institute of Technology. Computational and Systems Biology Program, Massachusetts Institute of Technology. Department of Biological Engineering, Massachusetts Institute of Technology. Department of Civil and Environmental Engineering, Alm, Eric J., Friedman, Jonathan, Smillie, Christopher S.

المصدر: PubMed Central

مصطلحات موضوعية: Adult, Male, Adolescent, Ecology (disciplines), Biology, Bioinformatics, 03 medical and health sciences, Young Adult, RNA, Ribosomal, 16S, Humans, Microbiome, Ecosystem, 030304 developmental biology, 0303 health sciences, Multidisciplinary, Bacteria, 030306 microbiology, Gastrointestinal Microbiome, Human microbiome, Biodiversity, Phenotype, Evolutionary biology, Health, Earth Microbiome Project, Metagenome, Enterotype, Female, Oral Microbiome, Metagenomics, Metabolic Networks and Pathways, Human Microbiome Project

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::3ff71aded835dab583b10f4b8a8ff714
http://hdl.handle.net/11572/34850