المؤلفون: Sayeepriyadarshini Anakk, Kannanganattu V. Prasanth, Gene W. Yeo, Ullas V. Chembazhi, Carolyn L. Cummins, Steven M. Blue, Michael F. Saikali, Qinyu Hao, Van Nostrand El, Bhoomika Mathur, Brian A. Yee, Waqar Arif, Sushant Bangru, Auinash Kalsotra

مصطلحات موضوعية: Transcriptome, Programmed cell death, Splicing factor, Transcription (biology), DNA damage, Gene expression, RNA, Biology, Tissue homeostasis, Cell biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::2b4ad0652a65921864401be82090dd34
https://doi.org/10.1101/2021.07.10.451875

المؤلفون: Kodali S; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA., Proietti L; Institute for Medical Biochemistry, University of Veterinary Medicine Vienna, Vienna, Austria., Valcarcel G; Josep Carreras Leukaemia Research Institute, Badalona, Spain., López-Rubio AV; Josep Carreras Leukaemia Research Institute, Badalona, Spain., Pessina P; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA., Eder T; Institute for Medical Biochemistry, University of Veterinary Medicine Vienna, Vienna, Austria., Shi J; Division of Biomedical Sciences, School of Medicine, University of California, Riverside, Riverside, CA, USA., Jen A; Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI, USA., Lupión-Garcia N; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA., Starner AC; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, USA., Bartels MD; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, USA., Cui Y; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA., Sands CM; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA., Planas-Riverola A; Josep Carreras Leukaemia Research Institute, Badalona, Spain., Martínez A; Josep Carreras Leukaemia Research Institute, Badalona, Spain., Velasco-Hernandez T; Josep Carreras Leukaemia Research Institute, Badalona, Spain., Tomás-Daza L; Josep Carreras Leukaemia Research Institute, Badalona, Spain., Alber B; Institute for Medical Biochemistry, University of Veterinary Medicine Vienna, Vienna, Austria., Manhart G; Institute for Medical Biochemistry, University of Veterinary Medicine Vienna, Vienna, Austria., Mayer IM; Institute of Pharmacology and Toxicology, University of Veterinary Medicine Vienna, Vienna, Austria., Kollmann K; Institute of Pharmacology and Toxicology, University of Veterinary Medicine Vienna, Vienna, Austria., Fatica A; Department of Biology and Biotechnology 'Charles Darwin', Sapienza University of Rome, Rome, Italy., Menendez P; Josep Carreras Leukaemia Research Institute, Badalona, Spain., Shishkova E; Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI, USA.; National Center for Quantitative Biology of Complex Systems, Madison, WI, USA., Rau RE; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA.; Department of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, TX, USA., Javierre BM; Josep Carreras Leukaemia Research Institute, Badalona, Spain., Coon J; Department of Biomolecular Chemistry, University of Wisconsin, Madison, WI, USA.; National Center for Quantitative Biology of Complex Systems, Madison, WI, USA.; Department of Chemistry, University of Wisconsin, Madison, WI, USA.; Morgridge Institute for Research, Madison, WI, USA., Chen Q; Molecular Medicine Program, Division of Urology, Department of Surgery, University of Utah School of Medicine, Salt Lake City, UT, USA., Van Nostrand EL; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, USA., Sardina JL; Josep Carreras Leukaemia Research Institute, Badalona, Spain. jsardina@carrerasresearch.org., Grebien F; Institute for Medical Biochemistry, University of Veterinary Medicine Vienna, Vienna, Austria. Florian.Grebien@vetmeduni.ac.at.; St. Anna Children's Cancer Research Institute (CCRI), Vienna, Austria. Florian.Grebien@vetmeduni.ac.at.; CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria. Florian.Grebien@vetmeduni.ac.at., Di Stefano B; Stem Cells and Regenerative Medicine Center, Baylor College of Medicine, Houston, TX, USA. bruno.distefano@bcm.edu.; Center for Cell and Gene Therapy, Baylor College of Medicine, Houston, TX, USA. bruno.distefano@bcm.edu.; Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA. bruno.distefano@bcm.edu.; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, TX, USA. bruno.distefano@bcm.edu.; Center for Cancer Epigenetics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA. bruno.distefano@bcm.edu.

المصدر: Nature cell biology [Nat Cell Biol] 2024 Aug 21. Date of Electronic Publication: 2024 Aug 21.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Macmillan Magazines Ltd Country of Publication: England NLM ID: 100890575 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4679 (Electronic) Linking ISSN: 14657392 NLM ISO Abbreviation: Nat Cell Biol Subsets: MEDLINE

المؤلفون: Bhola M; Simpson Querrey Institute for Epigenetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA., Abe K; Simpson Querrey Institute for Epigenetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA., Orozco P; Section of Molecular Biology, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA., Rahnamoun H; Section of Molecular Biology, University of California, San Diego, 9500 Gilman Drive, La Jolla, CA 92093, USA., Avila-Lopez P; Simpson Querrey Institute for Epigenetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA., Taylor E; Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208-3108, USA., Muhammad N; Simpson Querrey Institute for Epigenetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA., Liu B; Department of Chemistry, Department of Biochemistry and Molecular Biology, Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA., Patel P; Simpson Querrey Institute for Epigenetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA., Marko JF; Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208-3108, USA., Starner AC; Verna & Marrs McLean Department of Biochemistry & Molecular Pharmacology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, USA., He C; Department of Chemistry, Department of Biochemistry and Molecular Biology, Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA; Howard Hughes Medical Institute, The University of Chicago, Chicago, IL 60637, USA., Van Nostrand EL; Verna & Marrs McLean Department of Biochemistry & Molecular Pharmacology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, USA., Mondragón A; Department of Molecular Biosciences, Northwestern University, Evanston, IL 60208-3108, USA., Lauberth SM; Simpson Querrey Institute for Epigenetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; Department of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA. Electronic address: shannon.lauberth@northwestern.edu.

المصدر: Molecular cell [Mol Cell] 2024 Aug 19. Date of Electronic Publication: 2024 Aug 19.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE

المؤلفون: Zheng R; Lester & Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Dunlap M; Lester & Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Bobkov GOM; Lester & Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Gonzalez-Figueroa C; Department of Integrative Biology and Physiology and the Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA., Patel KJ; Lester & Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Lyu J; Lester & Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Harvey SE; Lester & Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Chan TW; Bioinformatics Interdepartmental Program, University of California, Los Angeles, Los Angeles, CA 90095, USA., Quinones-Valdez G; Department of Integrative Biology and Physiology and the Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA., Choudhury M; Bioinformatics Interdepartmental Program, University of California, Los Angeles, Los Angeles, CA 90095, USA., Le Roux CA; Verna & Marrs McLean Department of Biochemistry & Molecular Pharmacology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX 77030, USA., Bartels MD; Verna & Marrs McLean Department of Biochemistry & Molecular Pharmacology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX 77030, USA., Vuong A; Lester & Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Flynn RA; Center for Personal Dynamic Regulome, Stanford University School of Medicine, Stanford, CA 94305, USA., Chang HY; Center for Personal Dynamic Regulome, Stanford University School of Medicine, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305, USA., Van Nostrand EL; Verna & Marrs McLean Department of Biochemistry & Molecular Pharmacology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX 77030, USA., Xiao X; Department of Integrative Biology and Physiology and the Molecular Biology Institute, University of California, Los Angeles, Los Angeles, CA 90095, USA; Bioinformatics Interdepartmental Program, University of California, Los Angeles, Los Angeles, CA 90095, USA; Department of Bioengineering, University of California, Los Angeles, Los Angeles, CA 90095, USA. Electronic address: gxxiao@g.ucla.edu., Cheng C; Lester & Sue Smith Breast Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA. Electronic address: chonghui.cheng@bcm.edu.

المصدر: Molecular cell [Mol Cell] 2024 Jun 06; Vol. 84 (11), pp. 2087-2103.e8. Date of Electronic Publication: 2024 May 29.

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE

مواضيع طبية MeSH: Heterogeneous-Nuclear Ribonucleoprotein Group M*/genetics , Heterogeneous-Nuclear Ribonucleoprotein Group M*/metabolism , RNA, Double-Stranded*/genetics , RNA, Double-Stranded*/metabolism , Introns* , RNA Splicing* , Long Interspersed Nucleotide Elements*/genetics, Humans ; Interferons/metabolism ; Interferons/genetics ; Animals ; HEK293 Cells ; Mice ; Transcriptome ; Exons ; RNA Splice Sites ; Alu Elements/genetics

المؤلفون: Xu A; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Liu M; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Huang MF; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA.; The University of Texas MD Anderson Cancer Center UTHealth Houston Graduate School of Biomedical Sciences, Houston, TX, 77030, USA., Zhang Y; College of Science, Harbin Institute of Technology (Shenzhen), Shenzhen, Guangdong, 518055, China., Hu R; Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Gingold JA; Department of Obstetrics & Gynecology and Women's Health, Einstein/Montefiore Medical Center, Bronx, NY, 10461, USA., Liu Y; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Zhu D; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Chien CS; Department of Medical Research, Taipei Veterans General Hospital, Taipei, 112, Taiwan.; College of Medicine, National Yang Ming Chiao Tung University, Taipei, 112, Taiwan., Wang WC; Institute of Molecular Biology, National Chung Hsing University, Taichung, 40227, Taiwan., Liao Z; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, 77030, USA., Yuan F; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, 77030, USA., Hsu CW; Department of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX, 77030, USA., Tu J; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Yu Y; Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA., Rosen T; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Xiong F; Department of Biochemistry and Molecular Biology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Jia P; Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Yang YP; Department of Medical Research, Taipei Veterans General Hospital, Taipei, 112, Taiwan.; College of Medicine, National Yang Ming Chiao Tung University, Taipei, 112, Taiwan., Bazer DA; Department of Neurology, Renaissance School of Medicine at Stony Brook University, Stony Brook, NY, 11794, USA., Chen YW; Department of Otolaryngology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.; Department of Cell, Developmental and Regenerative Biology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.; Black Family Stem Cell Institute, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.; Institute for Airway Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA., Li W; The University of Texas MD Anderson Cancer Center UTHealth Houston Graduate School of Biomedical Sciences, Houston, TX, 77030, USA.; Department of Biochemistry and Molecular Biology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Huff CD; The University of Texas MD Anderson Cancer Center UTHealth Houston Graduate School of Biomedical Sciences, Houston, TX, 77030, USA.; Department of Epidemiology, The University of Texas MD Anderson Cancer Center, Houston, TX, 77030, USA., Zhu JJ; Department of Neurosurgery, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Aguilo F; Wallenberg Centre for Molecular Medicine (WCMM), Umea University, SE-901 85, Umea, Sweden.; Department of Molecular Biology, Umea University, SE-901 85, Umea, Sweden., Chiou SH; Department of Medical Research, Taipei Veterans General Hospital, Taipei, 112, Taiwan.; College of Medicine, National Yang Ming Chiao Tung University, Taipei, 112, Taiwan., Boles NC; Neural Stem Cell Institute, Rensselaer, NY, 12144, USA., Lai CC; Institute of Molecular Biology, National Chung Hsing University, Taichung, 40227, Taiwan.; Graduate institute of Chinese Medical Science, China Medical University, Taichung, 40402, Taiwan.; Ph.D. Program in Translational Medicine and Rong Hsing Research Center for Translational Medicine, National Chung Hsing University, Taichung, 40227, Taiwan., Hung MC; Graduate Institute of Biomedical Sciences and Center for Molecular Medicine, and Office of the President, China Medical University, Taichung, 404, Taiwan.; Department of Biotechnology, Asia University, Taichung, 413, Taiwan., Zhao Z; The University of Texas MD Anderson Cancer Center UTHealth Houston Graduate School of Biomedical Sciences, Houston, TX, 77030, USA.; Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA., Van Nostrand EL; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, 77030, USA., Zhao R; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA. ruiying.zhao@uth.tmc.edu., Lee DF; Department of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA. dung-fang.lee@uth.tmc.edu.; The University of Texas MD Anderson Cancer Center UTHealth Houston Graduate School of Biomedical Sciences, Houston, TX, 77030, USA. dung-fang.lee@uth.tmc.edu.; Center for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA. dung-fang.lee@uth.tmc.edu.; Center for Stem Cell and Regenerative Medicine, The Brown Foundation Institute of Molecular Medicine for the Prevention of Human Diseases, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA. dung-fang.lee@uth.tmc.edu.

المصدر: Nature communications [Nat Commun] 2023 Mar 27; Vol. 14 (1), pp. 1694. Date of Electronic Publication: 2023 Mar 27.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Li-Fraumeni Syndrome*/genetics , Glioma*/genetics, Humans ; Tumor Suppressor Protein p53/genetics ; Tumor Suppressor Protein p53/metabolism ; Cell Transformation, Neoplastic/genetics ; Proteoglycans/metabolism

المؤلفون: Arif W; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA.; College of Medicine, University of Illinois at Urbana-Champaign, Urbana, IL, USA., Mathur B; Department of Molecular and Integrative Physiology, University of Illinois Urbana-Champaign, Urbana, IL, USA., Saikali MF; Department of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, ON, Canada., Chembazhi UV; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA., Toohill K; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA., Song YJ; Department of Cell and Developmental Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA., Hao Q; Department of Cell and Developmental Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA., Karimi S; Department of Pathology, College of Medicine, Cancer Center, University of Illinois Hospital and Health Science Chicago, Chicago, IL, USA., Blue SM; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California at San Diego, La Jolla, CA, USA., Yee BA; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California at San Diego, La Jolla, CA, USA., Van Nostrand EL; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California at San Diego, La Jolla, CA, USA.; Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, USA., Bangru S; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA.; Cancer Center @ Illinois, University of Illinois Urbana-Champaign, Urbana, IL, USA., Guzman G; Department of Pathology, College of Medicine, Cancer Center, University of Illinois Hospital and Health Science Chicago, Chicago, IL, USA., Yeo GW; Department of Cellular and Molecular Medicine, University of California at San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California at San Diego, La Jolla, CA, USA., Prasanth KV; Department of Cell and Developmental Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.; Cancer Center @ Illinois, University of Illinois Urbana-Champaign, Urbana, IL, USA., Anakk S; Department of Molecular and Integrative Physiology, University of Illinois Urbana-Champaign, Urbana, IL, USA.; Cancer Center @ Illinois, University of Illinois Urbana-Champaign, Urbana, IL, USA., Cummins CL; Department of Pharmaceutical Sciences, Leslie Dan Faculty of Pharmacy, University of Toronto, Toronto, ON, Canada., Kalsotra A; Department of Biochemistry, University of Illinois Urbana-Champaign, Urbana, IL, USA. kalsotra@illinois.edu.; Cancer Center @ Illinois, University of Illinois Urbana-Champaign, Urbana, IL, USA. kalsotra@illinois.edu.; Carl R. Woese Institute of Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA. kalsotra@illinois.edu.

المصدر: Nature communications [Nat Commun] 2023 Feb 09; Vol. 14 (1), pp. 551. Date of Electronic Publication: 2023 Feb 09.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Non-alcoholic Fatty Liver Disease*/genetics, Humans ; Animals ; Mice ; RNA Splicing Factors/metabolism ; RNA/metabolism ; Serine-Arginine Splicing Factors/genetics ; Serine-Arginine Splicing Factors/metabolism ; RNA, Messenger/metabolism ; Alternative Splicing

المؤلفون: Benoit Bouvrette LP; Institut de Recherches Cliniques de Montréal (IRCM) Montréal, Québec, Canada.; Département de Biochimie et Médecine Moléculaire, Université de Montréal, Montréal, Québec, Canada., Wang X; Institut de Recherches Cliniques de Montréal (IRCM) Montréal, Québec, Canada., Boulais J; Institut de Recherches Cliniques de Montréal (IRCM) Montréal, Québec, Canada., Kong J; Institut de Recherches Cliniques de Montréal (IRCM) Montréal, Québec, Canada., Syed EU; Institut de Recherches Cliniques de Montréal (IRCM) Montréal, Québec, Canada.; Département de Biochimie et Médecine Moléculaire, Université de Montréal, Montréal, Québec, Canada., Blue SM; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA., Zhan L; Department of Genetics and Genome Sciences, UConn Health Center, Farmington, CT, USA., Olson S; Department of Genetics and Genome Sciences, UConn Health Center, Farmington, CT, USA., Stanton R; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA., Wei X; Department of Genetics and Genome Sciences, UConn Health Center, Farmington, CT, USA., Yee B; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA., Van Nostrand EL; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, USA., Fu XD; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA., Burge CB; Program of Computational and Systems Biology, Department of Biology, MIT, Cambridge, MA, USA., Graveley BR; Department of Genetics and Genome Sciences, UConn Health Center, Farmington, CT, USA., Yeo GW; Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA., Lécuyer E; Institut de Recherches Cliniques de Montréal (IRCM) Montréal, Québec, Canada.; Département de Biochimie et Médecine Moléculaire, Université de Montréal, Montréal, Québec, Canada.; Division of Experimental Medicine, McGill University, Montréal, Québec, Canada.

المصدر: Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D1549-D1557.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: RNA-Binding Proteins*/metabolism , Optical Imaging* , Databases, Factual*, Humans ; Antibodies/metabolism ; HeLa Cells ; RNA/chemistry ; Hep G2 Cells

المؤلفون: Blue SM; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Yee BA; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Pratt GA; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Mueller JR; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Park SS; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA., Shishkin AA; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA.; Eclipse Bioinnovations, San Diego, CA, USA., Starner AC; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, USA., Van Nostrand EL; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA.; Verna & Marrs McLean Department of Biochemistry & Molecular Biology and Therapeutic Innovation Center, Baylor College of Medicine, Houston, TX, USA., Yeo GW; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA. geneyeo@ucsd.edu.; Institute for Genomic Medicine, University of California San Diego, La Jolla, CA, USA. geneyeo@ucsd.edu.

المصدر: Nature protocols [Nat Protoc] 2022 May; Vol. 17 (5), pp. 1223-1265. Date of Electronic Publication: 2022 Mar 23.

نوع المنشور: Journal Article; Review; Research Support, N.I.H., Extramural

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101284307 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1750-2799 (Electronic) Linking ISSN: 17502799 NLM ISO Abbreviation: Nat Protoc Subsets: MEDLINE

مواضيع طبية MeSH: RNA*/genetics , Transcriptome*, Binding Sites ; High-Throughput Nucleotide Sequencing/methods ; Immunoprecipitation ; Protein Binding ; RNA-Binding Proteins/metabolism

المؤلفون: Moore JE; University of Massachusetts Medical School, Program in Bioinformatics and Integrative Biology, Worcester, MA, USA., Purcaro MJ; University of Massachusetts Medical School, Program in Bioinformatics and Integrative Biology, Worcester, MA, USA., Pratt HE; University of Massachusetts Medical School, Program in Bioinformatics and Integrative Biology, Worcester, MA, USA., Epstein CB; The Broad Institute of Harvard and MIT, Cambridge, MA, USA., Shoresh N; The Broad Institute of Harvard and MIT, Cambridge, MA, USA., Adrian J; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Kawli T; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Davis CA; Cold Spring Harbor Laboratory, Functional Genomics, Cold Spring Harbor, NY, USA., Dobin A; Cold Spring Harbor Laboratory, Functional Genomics, Cold Spring Harbor, NY, USA., Kaul R; Altius Institute for Biomedical Sciences, Seattle, WA, USA.; Department of Medicine, University of Washington School of Medicine, Seattle, WA, USA., Halow J; Altius Institute for Biomedical Sciences, Seattle, WA, USA., Van Nostrand EL; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, Stem Cell Program, Sanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, CA, USA., Freese P; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Gorkin DU; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA.; Ludwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA, USA., Shen Y; Ludwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA, USA.; Institute for Human Genetics, Department of Neurology, University of California, San Francisco, San Francisco, CA, USA., He Y; Genomics Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA., Mackiewicz M; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Pauli-Behn F; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA., Williams BA; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA., Mortazavi A; Department of Developmental and Cell Biology, University of California Irvine, Irvine, CA, USA., Keller CA; Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA., Zhang XO; University of Massachusetts Medical School, Program in Bioinformatics and Integrative Biology, Worcester, MA, USA., Elhajjajy SI; University of Massachusetts Medical School, Program in Bioinformatics and Integrative Biology, Worcester, MA, USA., Huey J; University of Massachusetts Medical School, Program in Bioinformatics and Integrative Biology, Worcester, MA, USA., Dickel DE; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Snetkova V; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Wei X; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA., Wang X; Département de Biochimie et Médecine Moléculaire, Université de Montréal, Montréal, Quebec, Canada.; Division of Experimental Medicine, McGill University, Montreal, Quebec, Canada.; Institut de Recherches Cliniques de Montréal (IRCM), Montréal, Quebec, Canada., Rivera-Mulia JC; Department of Biological Science, Florida State University, Tallahassee, FL, USA.; Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Medical School, Minneapolis, MN, USA., Rozowsky J; Yale University, New Haven, CT, USA., Zhang J; Yale University, New Haven, CT, USA., Chhetri SB; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.; Biological Sciences, University of Alabama in Huntsville, Huntsville, AL, USA., Zhang J; Department of Genetics, School of Medicine, Yale University, New Haven, CT, USA., Victorsen A; Department of Human Genetics, Institute for Genomics and Systems Biology, The University of Chicago, Chicago, IL, USA., White KP; Tempus Labs, Chicago, IL, USA., Visel A; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.; School of Natural Sciences, University of California, Merced, Merced, CA, USA., Yeo GW; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, Stem Cell Program, Sanford Consortium for Regenerative Medicine, University of California, San Diego, La Jolla, CA, USA., Burge CB; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA., Lécuyer E; Département de Biochimie et Médecine Moléculaire, Université de Montréal, Montréal, Quebec, Canada.; Division of Experimental Medicine, McGill University, Montreal, Quebec, Canada.; Institut de Recherches Cliniques de Montréal (IRCM), Montréal, Quebec, Canada., Gilbert DM; Department of Biological Science, Florida State University, Tallahassee, FL, USA., Dekker J; HHMI and Program in Systems Biology, University of Massachusetts Medical School, Worcester, MA, USA., Rinn J; University of Colorado Boulder, Boulder, CO, USA., Mendenhall EM; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA.; Biological Sciences, University of Alabama in Huntsville, Huntsville, AL, USA., Ecker JR; Genomics Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.; Howard Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA, USA., Kellis M; The Broad Institute of Harvard and MIT, Cambridge, MA, USA.; Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA., Klein RJ; Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA., Noble WS; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Kundaje A; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA., Guigó R; Bioinformatics and Genomics Program, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology and Universitat Pompeu Fabra, Barcelona, Spain., Farnham PJ; Department of Biochemistry and Molecular Medicine, Norris Comprehensive Cancer Center, Keck School of Medicine, University of Southern California, Los Angeles, CA, USA., Cherry JM; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA. cherry@stanford.edu., Myers RM; HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA. rmyers@hudsonalpha.org., Ren B; Center for Epigenomics, Department of Cellular and Molecular Medicine, University of California, San Diego, La Jolla, CA, USA. biren@ucsd.edu.; Ludwig Institute for Cancer Research, University of California, San Diego, La Jolla, CA, USA. biren@ucsd.edu., Graveley BR; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT, USA. graveley@uchc.edu., Gerstein MB; Yale University, New Haven, CT, USA. mark@gersteinlab.org., Pennacchio LA; Environmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. lapennacchio@lbl.gov.; US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, USA. lapennacchio@lbl.gov.; Comparative Biochemistry Program, University of California, Berkeley, CA, USA. lapennacchio@lbl.gov., Snyder MP; Department of Genetics, School of Medicine, Stanford University, Palo Alto, CA, USA. mpsnyder@stanford.edu.; Cardiovascular Institute, Stanford School of Medicine, Stanford, CA, USA. mpsnyder@stanford.edu., Bernstein BE; Broad Institute and Department of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA. Bernstein.Bradley@mgh.harvard.edu., Wold B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA. woldb@caltech.edu., Hardison RC; Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA, USA. rch8@psu.edu., Gingeras TR; Cold Spring Harbor Laboratory, Functional Genomics, Cold Spring Harbor, NY, USA. gingeras@cshl.edu., Stamatoyannopoulos JA; Altius Institute for Biomedical Sciences, Seattle, WA, USA. jstam@altius.org.; Department of Medicine, University of Washington School of Medicine, Seattle, WA, USA. jstam@altius.org.; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA. jstam@altius.org., Weng Z; University of Massachusetts Medical School, Program in Bioinformatics and Integrative Biology, Worcester, MA, USA. zhiping.weng@umassmed.edu.; Department of Thoracic Surgery, Clinical Translational Research Center, Shanghai Pulmonary Hospital, The School of Life Sciences and Technology, Tongji University, Shanghai, China. zhiping.weng@umassmed.edu.; Bioinformatics Program, Boston University, Boston, MA, USA. zhiping.weng@umassmed.edu.

مؤلفون مشاركون: ENCODE Project Consortium

المصدر: Nature [Nature] 2022 May; Vol. 605 (7909), pp. E3.

نوع المنشور: Published Erratum

بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: PubMed not MEDLINE; MEDLINE

المؤلفون: Xiang JS; Institute of Molecular and Cellular Biology, A*STAR, Singapore.; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Mueller JR; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Luo EC; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Yee BA; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Schafer D; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Schmok JC; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Tan FE; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Rothamel K; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., McVicar RN; Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA., Kwong EM; Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA., Croker BA; Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA 92037, USA., Jones KL; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Her HL; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Chen CY; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Vu AQ; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Jin W; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Park SS; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Le P; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Brannan KW; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Kofman ER; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Li Y; Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA., Tankka AT; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Dong KD; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Song Y; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA., Clark AE; Department of Medicine, University of California, San Diego, La Jolla, CA 92037, USA., Carlin AF; Department of Medicine, University of California, San Diego, La Jolla, CA 92037, USA., Van Nostrand EL; Verna & Marrs McLean Department of Biochemistry & Molecular Biology, Baylor College of Medicine, Houston, TX 77030, USA., Leibel SL; Department of Pediatrics, University of California San Diego School of Medicine, La Jolla, CA 92037, USA., Yeo GW; Department of Cellular and Molecular Medicine, Institute for Genomic Medicine, UCSD Stem Cell Program, University of California, San Diego, La Jolla, CA 92037, USA.

المصدر: Research square [Res Sq] 2022 Mar 17. Date of Electronic Publication: 2022 Mar 17.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE