المؤلفون: Frédérique Moyrand, Prashanthi Natarajan, Guilhem Janbon, Jade Sales-Lee, Laura R. Tuck, Frank Feuerbach, Wallace Ewj, Luciana de Oliveira, Hiten D. Madhani, Corinne Maufrais

المساهمون: Centre for Synthetic and Systems Biology (Ssynthsys), University of Edinburgh, Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Biologie des ARN des Pathogènes fongiques - RNA Biology of Fungal Pathogens, Institut Pasteur [Paris] (IP), Department of Biochemistry and Biophysics [San Francisco], University of California (UC), Génétique des Interactions macromoléculaires / Genetics of Macromolecular Interactions, Chan Zuckerberg BioHub [San Francisco, CA], This work in the Madhani lab was supported by grants from the US National Institutes of Health [R01AI120464, R01GM71801 to H.D.M.], H.D.M. is an Investigator of the Chan-Zuckerberg Biohub, E.W.J.W. is a Sir Henry Dale Fellow, supported by a Sir Henry Dale Fellowship jointly funded by the Wellcome Trust and the Royal Society [208779/Z/17/Z], L.T. is supported by a Wellcome-University of Edinburgh ISSF3 award, This work in the Janbon lab was supported by an Infect-ERA grant (project Cryptoview). Funding for open access charge: University of Edinburgh., We thank members of the Wallace, Janbon, and Madhani labs for helpful discussions and comments on the manuscript. We thank Juan Mata for sharing intermediate data related to (59). We are grateful to J. Weissman (UCSF) for advice on ribosome profiling. We thank three anonymous reviewers for their helpful comments., Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris], University of California, Génétique des Interactions macromoléculaires

المصدر: Wallace, E W J, Maufrais, C, Sales Lee, J, Tuck, L, de Oliveira, L, Feuerbach, F, Moyrand, F, Natarajan, P, Madhani, H D & Janbon, G 2020, ' Quantitative global studies reveal differential translational control by start codon context across the fungal kingdom ', Nucleic Acids Research, vol. 48, no. 5, pp. 2312-2331 . https://doi.org/10.1093/nar/gkaa060
Nucleic Acids Research
Nucleic Acids Research, 2020, 48 (5), pp.2312-2331. ⟨10.1093/nar/gkaa060⟩
Nucleic Acids Research, Oxford University Press, 2020, 48 (5), pp.2312-2331. ⟨10.1093/nar/gkaa060⟩

مصطلحات موضوعية: Kozak consensus sequence, Codon, Initiator, MESH: Gene Expression Regulation, Fungal, MESH: Saccharomyces cerevisiae / metabolism, Ribosome, 0302 clinical medicine, Start codon, Gene Expression Regulation, Fungal, MESH: Neurospora crassa / metabolism, Candida albicans, MESH: Schizosaccharomyces / metabolism, Peptide Chain Initiation, Translational, [SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology, Genetics, 0303 health sciences, Chromosome Mapping, Translation (biology), MESH: Codon, Initiator / chemistry, MESH: Candida albicans / genetics, Transfer RNA, Genome, Fungal, MESH: Genome, Fungal, MESH: Codon, Initiator / metabolism, MESH: Peptide Chain Initiation, Translational, Context (language use), Saccharomyces cerevisiae, Data Resources and Analyses, MESH: Amino Acyl-tRNA Synthetases / genetics, Biology, Amino Acyl-tRNA Synthetases, Open Reading Frames, 03 medical and health sciences, Species Specificity, Schizosaccharomyces, MESH: Neurospora crassa / genetics, MESH: Species Specificity, Gene, MESH: Cryptococcus / metabolism, 030304 developmental biology, [SDV.GEN]Life Sciences [q-bio]/Genetics, Neurospora crassa, MESH: Schizosaccharomyces / genetics, MESH: Cryptococcus / genetics, MESH: Open Reading Frames, MESH: Saccharomyces cerevisiae / genetics, Cryptococcus, Open reading frame, MESH: Amino Acyl-tRNA Synthetases / metabolism, MESH: Chromosome Mapping, MESH: Candida albicans / metabolism, 030217 neurology & neurosurgery

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bf61a7e41b710769c98f2c49ddc7d2bf
https://www.pure.ed.ac.uk/ws/files/133847580/gkaa060.pdf

المؤلفون: Hughes ES; Institute for Cell Biology, and Centre for Engineering Biology, School of Biological Sciences, The University of Edinburgh., Tuck LR; Institute for Cell Biology, and Centre for Engineering Biology, School of Biological Sciences, The University of Edinburgh., He Z; Institute for Cell Biology, and Centre for Engineering Biology, School of Biological Sciences, The University of Edinburgh., Ballou ER; MRC Centre for Medical Mycology, The University of Exeter., Wallace EWJ; Institute for Cell Biology, and Centre for Engineering Biology, School of Biological Sciences, The University of Edinburgh.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jun 11. Date of Electronic Publication: 2024 Jun 11.

نوع المنشور: Journal Article; Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Glauninger H; Graduate Program in Biophysical Sciences, The University of Chicago, Chicago, IL, USA.; Interdisciplinary Scientist Training Program, The University of Chicago, Chicago, IL, USA., Bard JAM; Department of Biology, Texas A&M University, College Station, TX, USA., Wong Hickernell CJ; Department of Biochemistry & Molecular Biology, The University of Chicago, Chicago, IL, USA., Airoldi EM; Fox School of Business and Management, Temple University, Philadelphia, PA, USA., Li W; Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, USA., Singer RH; Department of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, NY, USA.; Gruss-Lipper Biophotonics Center, Albert Einstein College of Medicine, Bronx, NY, USA.; Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY, USA., Paul S; Department of Biochemistry & Molecular Biology, The University of Chicago, Chicago, IL, USA., Fei J; Department of Biochemistry & Molecular Biology, The University of Chicago, Chicago, IL, USA.; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL, USA., Sosnick TR; Department of Biochemistry & Molecular Biology, The University of Chicago, Chicago, IL, USA.; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL, USA.; Pritzker School of Molecular Engineering, University of Chicago, Chicago, IL, USA., Wallace EWJ; School of Biological Sciences, University of Edinburgh, Edinburgh, Scotland, UK., Drummond DA; Department of Biochemistry & Molecular Biology, The University of Chicago, Chicago, IL, USA.; Institute for Biophysical Dynamics, University of Chicago, Chicago, IL, USA.; Department of Medicine, Section of Genetic Medicine, The University of Chicago, Chicago, IL, USA.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2024 May 02. Date of Electronic Publication: 2024 May 02.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Aspden JL; School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK.; LeedsOmics, University of Leeds, Leeds LS2 9JT, UK.; Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, UK., Wallace EWJ; Institute for Cell Biology and Centre for Engineering Biology, School of Biological Sciences, The University of Edinburgh, Edinburgh EH9 3BF, UK., Whiffin N; Big Data Institute, University of Oxford, Oxford OX3 7LF, UK.; Wellcome Centre for Human Genetics, University of Oxford, Oxford OX3 7BN, UK.

المصدر: Cell genomics [Cell Genom] 2023 Apr 12; Vol. 3 (4), pp. 100296. Date of Electronic Publication: 2023 Apr 12 (Print Publication: 2023).

نوع المنشور: Journal Article; Review

بيانات الدورية: Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: eCollection Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: PubMed not MEDLINE

المؤلفون: Mok A; Center for Computational Biology, University of California, Berkeley., Tunney R; Center for Computational Biology, University of California, Berkeley., Benegas G; Center for Computational Biology, University of California, Berkeley., Wallace EWJ; School of Biological Sciences, University of Edinburgh., Lareau LF; Center for Computational Biology, University of California, Berkeley.; Department of Bioengineering, University of California, Berkeley.

المصدر: BioRxiv : the preprint server for biology [bioRxiv] 2023 Feb 22. Date of Electronic Publication: 2023 Feb 22.

نوع المنشور: Preprint

بيانات الدورية: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

المؤلفون: Cope AL; Department of Genetics, Rutgers University, Piscataway, NJ 08854-8082, USA., Anderson F; Institute for Cell Biology and SynthSys, School of Biological Sciences, The University of Edinburgh, Edinburgh EH9 3BF, UK., Favate J; Department of Genetics, Rutgers University, Piscataway, NJ 08854-8082, USA., Jackson M; EPCC, The University of Edinburgh, Edinburgh EH8 9BT, UK., Mok A; Center for Computational Biology, University of California, Berkeley, CA 94720, USA., Kurowska A; Institute for Cell Biology and SynthSys, School of Biological Sciences, The University of Edinburgh, Edinburgh EH9 3BF, UK., Liu J; EPCC, The University of Edinburgh, Edinburgh EH8 9BT, UK., MacKenzie E; Institute for Cell Biology and SynthSys, School of Biological Sciences, The University of Edinburgh, Edinburgh EH9 3BF, UK., Shivakumar V; Department of Bioengineering, University of California, Berkeley, CA 94720, USA., Tilton P; Department of Genetics, Rutgers University, Piscataway, NJ 08854-8082, USA., Winterbourne SM; Institute for Cell Biology and SynthSys, School of Biological Sciences, The University of Edinburgh, Edinburgh EH9 3BF, UK., Xue S; Institute for Cell Biology and SynthSys, School of Biological Sciences, The University of Edinburgh, Edinburgh EH9 3BF, UK., Kavoussanakis K; EPCC, The University of Edinburgh, Edinburgh EH8 9BT, UK., Lareau LF; Center for Computational Biology, University of California, Berkeley, CA 94720, USA.; Department of Bioengineering, University of California, Berkeley, CA 94720, USA., Shah P; Department of Genetics, Rutgers University, Piscataway, NJ 08854-8082, USA., Wallace EWJ; Institute for Cell Biology and SynthSys, School of Biological Sciences, The University of Edinburgh, Edinburgh EH9 3BF, UK.

المصدر: Bioinformatics (Oxford, England) [Bioinformatics] 2022 Apr 12; Vol. 38 (8), pp. 2358-2360.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

مواضيع طبية MeSH: Ribosomes*/genetics , Ribosomes*/metabolism , Ribosome Profiling*, Workflow ; RNA, Messenger/metabolism ; Data Analysis ; Sequence Analysis, RNA/methods

المؤلفون: Bayne RA; Institute of Cell Biology and SynthSys, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK., Jayachandran U; Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK., Kasprowicz A; Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK., Bresson S; Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK., Tollervey D; Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK., Wallace EWJ; Institute of Cell Biology and SynthSys, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK., Cook AG; Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, UK.

المصدر: Nucleic acids research [Nucleic Acids Res] 2022 Mar 21; Vol. 50 (5), pp. 2923-2937.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

مواضيع طبية MeSH: Exoribonucleases*/metabolism , Saccharomyces cerevisiae*/metabolism , Saccharomyces cerevisiae Proteins*/genetics , Saccharomyces cerevisiae Proteins*/metabolism, 5' Untranslated Regions ; RNA, Messenger/genetics ; RNA, Messenger/metabolism

المؤلفون: Bain SA; Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom., Plaisier H; Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom., Anderson F; Institute for Cell Biology and SynthSys, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom., Cook N; Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, United Kingdom., Crouch K; Wellcome Centre for Integrative Parasitology, University of Glasgow, Glasgow, United Kingdom., Meagher TR; Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, United Kingdom., Ritchie MG; Centre for Biological Diversity, School of Biology, University of St Andrews, St Andrews, United Kingdom., Wallace EWJ; Institute for Cell Biology and SynthSys, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom., Barker D; Institute of Evolutionary Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom.

المصدر: PLoS computational biology [PLoS Comput Biol] 2022 Jan 20; Vol. 18 (1), pp. e1009705. Date of Electronic Publication: 2022 Jan 20 (Print Publication: 2022).

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

مواضيع طبية MeSH: Computational Biology*/education , Computational Biology*/organization & administration, Adolescent ; Career Choice ; Female ; Humans ; Male ; Schools ; Scotland ; Students

المؤلفون: Hall RA; Kent Fungal Group, Division of Natural Sciences, School of Biosciences, University of Kent, Canterbury CT2 7NJ, United Kingdom., Wallace EWJ; Institute for Cell Biology and SynthSys, School of Biological Sciences, University of Edinburgh, EH9 3FF, United Kingdom.

المصدر: Cell surface (Amsterdam, Netherlands) [Cell Surf] 2022 Jan 12; Vol. 8, pp. 100074. Date of Electronic Publication: 2022 Jan 12 (Print Publication: 2022).

نوع المنشور: Journal Article

بيانات الدورية: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 101728565 Publication Model: eCollection Cited Medium: Internet ISSN: 2468-2330 (Electronic) Linking ISSN: 24682330 NLM ISO Abbreviation: Cell Surf Subsets: PubMed not MEDLINE

المؤلفون: Ballou ER; Institute for Microbiology and Infection, School of Biosciences, University of Birmingham, Birmingham, United Kingdom., Cook AG; Wellcome Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom., Wallace EWJ; Institute for Cell Biology and SynthSys, School of Biological Sciences, University of Edinburgh, Edinburgh, United Kingdom.

المصدر: Molecular biology and evolution [Mol Biol Evol] 2021 May 04; Vol. 38 (5), pp. 1837-1846.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE

مواضيع طبية MeSH: Evolution, Molecular* , Multigene Family*, Ascomycota/*genetics , Exoribonucleases/*genetics, Ascomycota/enzymology ; Catalytic Domain/genetics ; Cryptococcus neoformans/physiology ; Cytokinesis ; Phylogeny ; Saccharomyces cerevisiae Proteins/genetics