المؤلفون: Helen Park, Marcin P. Joachimiak, Sean P. Jungbluth, Ziming Yang, William J. Riehl, R. Shane Canon, Adam P. Arkin, Paramvir S. Dehal

المصدر: mSystems, Vol 9, Iss 1 (2024)

مصطلحات موضوعية: metagenomics, machine learning, histidine kinase, sensory transduction processes, human microbiome, feature importance, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2379-5077

URL الوصول: https://doaj.org/article/a625ab5429de49c5ae5cd1501a9ffcc7

المؤلفون: William R. Harcombe, William J. Riehl, Ilija Dukovski, Brian R. Granger, Alex Betts, Alex H. Lang, Gracia Bonilla, Amrita Kar, Nicholas Leiby, Pankaj Mehta, Christopher J. Marx, Daniel Segrè

المصدر: Cell Reports, Vol 7, Iss 4, Pp 1104-1115 (2014)

مصطلحات موضوعية: Biology (General), QH301-705.5

وصف الملف: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124714002800; https://doaj.org/toc/2211-1247

URL الوصول: https://doaj.org/article/9e3b6f64f81a4eda9eb261e55bd39a3f

المؤلفون: Michael Quintin, Ilija Dukovski, Alvaro Sanchez, Kirill S. Korolev, Daniel Segrè, Alan R. Pacheco, Djordje Bajić, Snorre Sulheim, David B. Bernstein, Jean C. C. Vila, William R. Harcombe, Jeremy M. Chacón, William J. Riehl

المصدر: Nature Protocols. 16:5030-5082

مصطلحات موضوعية: 0303 health sciences, Computer science, Systems biology, Computation, Python (programming language), General Biochemistry, Genetics and Molecular Biology, Flux balance analysis, 03 medical and health sciences, 0302 clinical medicine, 13. Climate action, Ecosystem, Biochemical engineering, Evolutionary dynamics, MATLAB, Protocol (object-oriented programming), computer, 030217 neurology & neurosurgery, 030304 developmental biology, computer.programming_language

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::a3c6941fc7ccc669d8f63e7f9ca63682
https://doi.org/10.1038/s41596-021-00593-3

المؤلفون: Dylan Chivian, Sean P. Jungbluth, Paramvir S. Dehal, Elisha M. Wood-Charlson, Richard S. Canon, Benjamin H. Allen, Mikayla M. Clark, Tianhao Gu, Miriam L. Land, Gavin A. Price, William J. Riehl, Michael W. Sneddon, Roman Sutormin, Qizhi Zhang, Robert W. Cottingham, Chris S. Henry, Adam P. Arkin

المصدر: Nature Protocols.

مصطلحات موضوعية: General Biochemistry, Genetics and Molecular Biology

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::ff4884c1371b3c44e75542abad4c1944
https://doi.org/10.1038/s41596-022-00794-4

المؤلفون: Dylan, Chivian, Sean P, Jungbluth, Paramvir S, Dehal, Elisha M, Wood-Charlson, Richard S, Canon, Benjamin H, Allen, Mikayla M, Clark, Tianhao, Gu, Miriam L, Land, Gavin A, Price, William J, Riehl, Michael W, Sneddon, Roman, Sutormin, Qizhi, Zhang, Robert W, Cottingham, Chris S, Henry, Adam P, Arkin

المصدر: Nature protocols.

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::894d6877e8c1518ba141af01ebae2606
https://pubmed.ncbi.nlm.nih.gov/36451056

المؤلفون: Ilija, Dukovski, Djordje, Bajić, Jeremy M, Chacón, Michael, Quintin, Jean C C, Vila, Snorre, Sulheim, Alan R, Pacheco, David B, Bernstein, William J, Riehl, Kirill S, Korolev, Alvaro, Sanchez, William R, Harcombe, Daniel, Segrè

المصدر: Nature protocols. 16(11)

مصطلحات موضوعية: Microbiota, Systems Biology, Models, Biological

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmid________::759f30853313deb5af827d9c6d51596c
https://pubmed.ncbi.nlm.nih.gov/34635859

المؤلفون: Boris Sadkhin, Richard Shane Canon, William J. Riehl, Jay R. Bolton

المصدر: 2019 IEEE/ACM International Workshop on Containers and New Orchestration Paradigms for Isolated Environments in HPC (CANOPIE-HPC).

مصطلحات موضوعية: Biological data, business.industry, Key (cryptography), Software engineering, business

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_________::cb315fcb0b07608aa88a9d41c544be92
https://doi.org/10.1109/canopie-hpc49598.2019.00009

المؤلفون: Shinjae Yoo, Matthew L. Henderson, Sarah S. Poon, Pavel S. Novichkov, Mark Mills, Roy T. Kamimura, Adam P. Arkin, Rick Stevens, Holly L. Haun, Shinnosuke Kondo, Meghan M Drake, Aaron A. Best, José P. Faria, Fernando Perez, Matthew DeJongh, Gang Fang, Thomas Brettin, Sergei Maslov, Janaka N. Edirisinghe, Folker Meyer, Jer Ming Chia, Scott Devoid, Doreen Ware, Steven E. Brenner, Paul M. Frybarger, Miriam Land, Dan Gunter, Fei He, John-Marc Chandonia, Hyunseung Yoo, Marcin P. Joachimiak, Dantong Yu, Christopher S. Henry, Mark Gerstein, Christopher Bun, Michael W. Sneddon, Samuel M. D. Seaver, Rashmi Jain, Stephen Y. Chan, Robert W. Cottingham, James J. Davis, Annette Greiner, Inna Dubchak, Vivek Kumar, Priya Ranjan, Daifeng Wang, Neal Conrad, James Thomason, Fangfang Xia, Maulik Shukla, Gavin Price, Nathan L. Tintle, Gary J. Olsen, Shiran Pasternak, Shane Canon, Roman A. Sutormin, William J. Riehl, Nomi L. Harris, Dan Murphy-Olson, Jason K. Baumohl, Wolfgang Gerlach, Benjamin H. Allen, Pamela C. Ronald, Michael C. Schatz, Mustafa H Syed, Brian H. Davison, Taeyun Oh, Dylan Chivian, Elizabeth M. Glass, R. L. Colasanti, Erik Pearson, David J. Weston, Sunita Kumari, Kevin P. Keegan, Emily M. Dietrich, Robert Olson, Srividya Ramakrishnan, James Gurtowski, Benjamin P. Bowen, Paramvir S. Dehal, Bruce Parrello

المصدر: Nature biotechnology, vol 36, iss 7
Nature Biotechnology
Arkin, AP; Cottingham, RW; Henry, CS; Harris, NL; Stevens, RL; Maslov, S; et al.(2018). KBase: The United States department of energy systems biology knowledgebase. Nature Biotechnology, 36(7), 566-569. doi: 10.1038/nbt.4163. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/7p39r37f

مصطلحات موضوعية: 0301 basic medicine, Systems Biology, Knowledge Bases, Philosophy, 030106 microbiology, Biomedical Engineering, Computational Biology, Bioengineering, Applied Microbiology and Biotechnology, Article, United States, Databases, 03 medical and health sciences, Energy (psychological), 030104 developmental biology, Computational platforms and environments, Humans, Database Management Systems, Molecular Medicine, Data integration, Theology, Software, Biotechnology

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c789b3716f923398ce5518911fb65ab7
https://doi.org/10.1038/nbt.4163

المؤلفون: Ilija Dukovski, William R. Harcombe, Brian R. Granger, Daniel Segrè, Alex H. Lang, Pankaj Mehta, Gracia Bonilla, William J. Riehl, Nicholas Leiby, Christopher J. Marx, Alex Betts, Amrita Kar

المصدر: Cell Reports, Vol 7, Iss 4, Pp 1104-1115 (2014)

مصطلحات موضوعية: Ecology, Extramural, Microbiota, Spatial Behavior, Biology, Models, Biological, General Biochemistry, Genetics and Molecular Biology, Article, Flux balance analysis, Spatio-Temporal Analysis, lcsh:Biology (General), Spatial behavior, Ecosystem, Predictability, lcsh:QH301-705.5

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f9a1d634449f840a99f7f7cbc971c95c
http://www.sciencedirect.com/science/article/pii/S2211124714002800

المؤلفون: Seaver Smd, Erik Pearson, José P. Faria, Gary J. Olsen, Olson B, Sarah S. Poon, Jason K. Baumohl, Christopher Bun, Emily M. Dietrich, Pamela C. Ronald, Nathan L. Tintle, Fei He, Paramvir S. Dehal, Marcin P. Joachimiak, Benjamin H. Allen, Thomas Brettin, Benjamin P. Bowen, Folker Meyer, Steven E. Brenner, Holly L. Haun, Shinjae Yoo, Fernando Perez, Matthew DeJongh, R. L. Colasanti, Maulik Shukla, Wolfgang Gerlach, Kevin P. Keegan, Jer Ming Chia, Michael C. Schatz, Taeyun Oh, Dylan Chivian, James Thomason, Sergei Maslov, Roman A. Sutormin, John-Marc Chandonia, Nomi L. Harris, Dan Murphy-Olson, James J. Davis, Hyunseung Yoo, Matthew L. Henderson, Roy T. Kamimura, Shane Canon, Michael W. Sneddon, Christopher S. Henry, Stephen Y. Chan, Pavel S. Novichkov, Inna Dubchak, Mark Mills, Adam P. Arkin, Neal Conrad, Fangfang Xia, Gang Fang, Scott Devoid, Janaka N. Edirisinghe, Brian H. Davison, Bruce Parrello, Shinnosuke Kondo, William J. Riehl, Paul M. Frybarger, Doreen Ware, Miriam Land, Dan Gunter, Rashmi Jain, Rick Stevens, Meghan M Drake, Gavin Price, Shiran Pasternak, Mustafa H Syed, Mark Gerstein, David J. Weston, Sunita Kumari, Kumar, Robert W. Cottingham, Elizabeth M. Glass, James Gurtowski, Aaron A. Best, Daifeng Wang, Srividya Ramakrishnan, Priya Ranjan

مصطلحات موضوعية: Comparative genomics, Computer science, business.industry, Scale (chemistry), Systems biology, Human Genome, Software development, Bioengineering, Ontology (information science), Data science, Transcriptome, Software, Networking and Information Technology R&D (NITRD), Genetics, Generic health relevance, business

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a42f71091420946234b6e35b826e316f
https://escholarship.org/uc/item/4058b7v5