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المؤلفون: Vega Thurber RL; 1Department of Microbiology, Oregon State University, Corvallis, Oregon, USA; email: rvegathurber@gmail.com.; 2Marine Science Institute and Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, California, USA., Silva D; 1Department of Microbiology, Oregon State University, Corvallis, Oregon, USA; email: rvegathurber@gmail.com.; 2Marine Science Institute and Department of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, California, USA., Speare L; 1Department of Microbiology, Oregon State University, Corvallis, Oregon, USA; email: rvegathurber@gmail.com.; 3School of Biological Sciences and Center for Microbial Dynamics and Infection, Georgia Institute of Technology, Atlanta, Georgia, USA., Croquer A; 4The Nature Conservancy, Caribbean Division, Punta Cana, La Altagracia, Dominican Republic., Veglia AJ; 5Department of Biology, University of Puerto Rico at Mayagüez, Mayagüez, Puerto Rico, USA.; 6EcoAzul, La Parguera, Puerto Rico, USA., Alvarez-Filip L; 7Unidad Académica de Sistemas Arrecifales, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Puerto Morelos, Quintana Roo, México., Zaneveld JR; 8Division of Biological Sciences, School of Science, Technology, Engineering, and Mathematics, University of Washington Bothell, Bothell, Washington, USA., Muller EM; 9Mote Marine Laboratory, Sarasota, Florida, USA., Correa AMS; 10Department of Environmental Science, Policy, and Management, University of California, Berkeley, California, USA.

المصدر: Annual review of marine science [Ann Rev Mar Sci] 2024 Sep 03. Date of Electronic Publication: 2024 Sep 03.

نوع المنشور: Journal Article; Review

بيانات الدورية: Publisher: Annual Reviews Country of Publication: United States NLM ID: 101536246 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1941-0611 (Electronic) Linking ISSN: 19410611 NLM ISO Abbreviation: Ann Rev Mar Sci Subsets: MEDLINE

المؤلفون: Brown T; School of Aquatic and Fisheries Sciences, University of Washington, Seattle, Washington, USA., Sonett D; Division of Biological Sciences, University of Washington, Bothell, Washington, USA., Zaneveld JR; Division of Biological Sciences, University of Washington, Bothell, Washington, USA., Padilla-Gamiño JL; School of Aquatic and Fisheries Sciences, University of Washington, Seattle, Washington, USA.

المصدر: Molecular ecology [Mol Ecol] 2021 Jun; Vol. 30 (11), pp. 2591-2606. Date of Electronic Publication: 2021 May 02.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Blackwell Scientific Publications Country of Publication: England NLM ID: 9214478 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1365-294X (Electronic) Linking ISSN: 09621083 NLM ISO Abbreviation: Mol Ecol Subsets: MEDLINE

مواضيع طبية MeSH: Anthozoa*/genetics , Microbiota*/genetics, Animals ; Coral Reefs ; Hawaii ; Immunity ; RNA, Ribosomal, 16S/genetics

المؤلفون: Douglas GM; Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada., Maffei VJ; Department of Microbiology, Immunology, and Parasitology, Louisiana State University Health Sciences Center, New Orleans, LA, USA., Zaneveld JR; Division of Biological Sciences, School of STEM, University of Washington Bothell, Bothell, WA, USA., Yurgel SN; Department of Plant, Food, and Environmental Sciences, Dalhousie University, Truro, Nova Scotia, Canada., Brown JR; Computational Biology, GlaxoSmithKline R&D, Collegeville, PA, USA., Taylor CM; Department of Microbiology, Immunology, and Parasitology, Louisiana State University Health Sciences Center, New Orleans, LA, USA., Huttenhower C; Biostatistics Department, Harvard T. H. Chan School of Public Health, Boston, MA, USA., Langille MGI; Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada. morgan.langille@dal.ca.; Department of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada. morgan.langille@dal.ca.

المصدر: Nature biotechnology [Nat Biotechnol] 2020 Jun; Vol. 38 (6), pp. 685-688.

نوع المنشور: Letter; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

مواضيع طبية MeSH: Metagenome*/genetics , Metagenome*/physiology , Software*, Computational Biology/*methods , Metagenomics/*methods, Genes, Bacterial/genetics ; RNA, Ribosomal, 16S/genetics

المؤلفون: Bolyen E; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Rideout JR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Dillon MR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Bokulich NA; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Abnet CC; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Al-Ghalith GA; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA., Alexander H; Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.; Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA., Alm EJ; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USA., Arumugam M; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Asnicar F; Centre for Integrative Biology, University of Trento, Trento, Italy., Bai Y; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China.; University of Chinese Academy of Sciences, Beijing, China., Bisanz JE; Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA., Bittinger K; Division of Gastroenterology and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, USA.; Hepatology, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Brejnrod A; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Brislawn CJ; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Brown CT; Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA., Callahan BJ; Department of Population Health & Pathobiology, North Carolina State University, Raleigh, NC, USA.; Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA., Caraballo-Rodríguez AM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Chase J; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Cope EK; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA., Da Silva R; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Diener C; Institute for Systems Biology, Seattle, WA, USA., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Douglas GM; Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada., Durall DM; Irving K. Barber School of Arts and Sciences, University of British Columbia, Kelowna, British Columbia, Canada., Duvallet C; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA., Edwardson CF; A. Watson Armour III Center for Animal Health and Welfare, Aquarium Microbiome Project, John G. Shedd Aquarium, Chicago, IL, USA., Ernst M; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark., Estaki M; Department of Biology, University of British Columbia Okanagan, Okanagan, British Columbia, Canada., Fouquier J; Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Gauglitz JM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Gibbons SM; Institute for Systems Biology, Seattle, WA, USA.; eScience Institute, University of Washington, Seattle, WA, USA., Gibson DL; Irving K. Barber School of Arts and Sciences, Department of Biology, University of British Columbia, Kelowna, British Columbia, Canada.; Department of Medicine, University of British Columbia, Kelowna, British Columbia, Canada., Gonzalez A; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Gorlick K; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Guo J; Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA., Hillmann B; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA., Holmes S; Statistics Department, Stanford University, Palo Alto, CA, USA., Holste H; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Huttenhower C; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Huttley GA; Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia., Janssen S; Department of Pediatric Oncology, Hematology and Clinical Immunology, Heinrich-Heine University Dusseldorf, Dusseldorf, Germany., Jarmusch AK; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Jiang L; Department of Family Medicine and Public Health, University of California San Diego, La Jolla, CA, USA., Kaehler BD; Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.; School of Science, University of New South Wales, Canberra, Australian Capital Territory, Australia., Kang KB; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; College of Pharmacy, Sookmyung Women's University, Seoul, Republic of Korea., Keefe CR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Keim P; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Kelley ST; Department of Biology, San Diego State University, San Diego, CA, USA., Knights D; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA.; Biotechnology Institute, University of Minnesota, Saint Paul, MN, USA., Koester I; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Kosciolek T; Department of Pediatrics, University of California San Diego, La Jolla, California, USA., Kreps J; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Langille MGI; Department of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada., Lee J; Science Education, Howard Hughes Medical Institute, Ashburn, VA, USA., Ley R; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA., Liu YX; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China., Loftfield E; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Lozupone C; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Maher M; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA., Marotz C; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Martin BD; Department of Statistics, University of Washington, Seattle, WA, USA., McDonald D; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., McIver LJ; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Melnik AV; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Metcalf JL; Department of Animal Science, Colorado State University, Fort Collins, CO, USA., Morgan SC; Irving K. Barber School of Arts and Sciences, Unit 2 (Biology), University of British Columbia, Kelowna, British Columbia, Canada., Morton JT; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA., Naimey AT; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Navas-Molina JA; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA.; Google LLC, Mountain View, CA, USA., Nothias LF; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Orchanian SB; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Pearson T; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Peoples SL; School of Information Studies, Syracuse University, Syracuse, NY, USA.; School of STEM, University of Washington Bothell, Bothell, WA, USA., Petras D; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Preuss ML; Department of Biological Sciences, Webster University, St. Louis, MO, USA., Pruesse E; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Rasmussen LB; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Rivers A; Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA., Robeson MS 2nd; College of Medicine, Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA., Rosenthal P; Department of Biological Sciences, Webster University, St. Louis, MO, USA., Segata N; Centre for Integrative Biology, University of Trento, Trento, Italy., Shaffer M; Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Shiffer A; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Sinha R; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Song SJ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Spear JR; Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, USA., Swafford AD; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Thompson LR; Department of Biological Sciences and Northern Gulf Institute, University of Southern Mississippi, Hattiesburg, MS, USA.; Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, La Jolla, CA, USA., Torres PJ; Department of Biology, San Diego State University, San Diego, CA, USA., Trinh P; Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, USA., Tripathi A; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Division of Biological Sciences, University of California San Diego, San Diego, CA, USA., Turnbaugh PJ; Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA., Ul-Hasan S; Quantitative and Systems Biology Graduate Program, University of California Merced, Merced, CA, USA., van der Hooft JJJ; Bioinformatics Group, Wageningen University, Wageningen, the Netherlands., Vargas F; Division of Biological Sciences, University of California San Diego, San Diego, CA, USA., Vázquez-Baeza Y; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Vogtmann E; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., von Hippel M; Department of Mathematics, University of Arizona, Tucson, AZ, USA., Walters W; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany., Wan Y; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Wang M; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Warren J; National Laboratory Service, Environment Agency, Starcross, UK., Weber KC; Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA.; College of Agriculture and Life Sciences, University of Florida, Gainesville, FL, USA., Williamson CHD; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Willis AD; Department of Biostatistics, University of Washington, Seattle, WA, USA., Xu ZZ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Zaneveld JR; School of STEM, Division of Biological Sciences, University of Washington Bothell, Bothell, WA, USA., Zhang Y; Merck & Co. Inc., Kenilworth, NJ, USA., Zhu Q; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Caporaso JG; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. greg.caporaso@nau.edu.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA. greg.caporaso@nau.edu.

المصدر: Nature biotechnology [Nat Biotechnol] 2019 Sep; Vol. 37 (9), pp. 1091.

نوع المنشور: Published Erratum

بيانات الدورية: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: PubMed not MEDLINE; MEDLINE

المؤلفون: Bolyen E; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Rideout JR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Dillon MR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Bokulich NA; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Abnet CC; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Al-Ghalith GA; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA., Alexander H; Biology Department, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.; Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA., Alm EJ; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA.; Center for Microbiome Informatics and Therapeutics, Massachusetts Institute of Technology, Cambridge, MA, USA., Arumugam M; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Asnicar F; Centre for Integrative Biology, University of Trento, Trento, Italy., Bai Y; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China.; University of Chinese Academy of Sciences, Beijing, China., Bisanz JE; Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA, USA., Bittinger K; Division of Gastroenterology and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, USA.; Hepatology, Children's Hospital of Philadelphia, Philadelphia, PA, USA., Brejnrod A; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Brislawn CJ; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Brown CT; Department of Population Health and Reproduction, University of California, Davis, Davis, CA, USA., Callahan BJ; Department of Population Health & Pathobiology, North Carolina State University, Raleigh, NC, USA.; Bioinformatics Research Center, North Carolina State University, Raleigh, NC, USA., Caraballo-Rodríguez AM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Chase J; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Cope EK; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA., Da Silva R; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Diener C; Institute for Systems Biology, Seattle, WA, USA., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Douglas GM; Department of Microbiology and Immunology, Dalhousie University, Halifax, Nova Scotia, Canada., Durall DM; Irving K. Barber School of Arts and Sciences, University of British Columbia, Kelowna, British Columbia, Canada., Duvallet C; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA., Edwardson CF; A. Watson Armour III Center for Animal Health and Welfare, Aquarium Microbiome Project, John G. Shedd Aquarium, Chicago, IL, USA., Ernst M; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark., Estaki M; Department of Biology, University of British Columbia Okanagan, Okanagan, British Columbia, Canada., Fouquier J; Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Gauglitz JM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Gibbons SM; Institute for Systems Biology, Seattle, WA, USA.; eScience Institute, University of Washington, Seattle, WA, USA., Gibson DL; Irving K. Barber School of Arts and Sciences, Department of Biology, University of British Columbia, Kelowna, British Columbia, Canada.; Department of Medicine, University of British Columbia, Kelowna, British Columbia, Canada., Gonzalez A; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Gorlick K; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Guo J; Center for Microbial Ecology, Michigan State University, East Lansing, MI, USA., Hillmann B; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA., Holmes S; Statistics Department, Stanford University, Palo Alto, CA, USA., Holste H; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Huttenhower C; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Huttley GA; Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia., Janssen S; Department of Pediatric Oncology, Hematology and Clinical Immunology, Heinrich-Heine University Dusseldorf, Dusseldorf, Germany., Jarmusch AK; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Jiang L; Department of Family Medicine and Public Health, University of California San Diego, La Jolla, CA, USA., Kaehler BD; Research School of Biology, The Australian National University, Canberra, Australian Capital Territory, Australia.; School of Science, University of New South Wales, Canberra, Australian Capital Territory, Australia., Kang KB; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; College of Pharmacy, Sookmyung Women's University, Seoul, Republic of Korea., Keefe CR; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Keim P; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Kelley ST; Department of Biology, San Diego State University, San Diego, CA, USA., Knights D; Department of Computer Science and Engineering, University of Minnesota, Minneapolis, MN, USA.; Biotechnology Institute, University of Minnesota, Saint Paul, MN, USA., Koester I; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Kosciolek T; Department of Pediatrics, University of California San Diego, La Jolla, California, USA., Kreps J; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Langille MGI; Department of Pharmacology, Dalhousie University, Halifax, Nova Scotia, Canada., Lee J; Science Education, Howard Hughes Medical Institute, Ashburn, VA, USA., Ley R; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY, USA., Liu YX; State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China.; Centre of Excellence for Plant and Microbial Sciences (CEPAMS), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences & John Innes Centre, Beijing, China., Loftfield E; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Lozupone C; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Maher M; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA., Marotz C; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Martin BD; Department of Statistics, University of Washington, Seattle, WA, USA., McDonald D; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., McIver LJ; Department of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, USA., Melnik AV; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Metcalf JL; Department of Animal Science, Colorado State University, Fort Collins, CO, USA., Morgan SC; Irving K. Barber School of Arts and Sciences, Unit 2 (Biology), University of British Columbia, Kelowna, British Columbia, Canada., Morton JT; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA., Naimey AT; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Navas-Molina JA; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science & Engineering, University of California San Diego, La Jolla, CA, USA.; Google LLC, Mountain View, CA, USA., Nothias LF; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Orchanian SB; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Pearson T; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Peoples SL; School of Information Studies, Syracuse University, Syracuse, NY, USA.; School of STEM, University of Washington Bothell, Bothell, WA, USA., Petras D; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Preuss ML; Department of Biological Sciences, Webster University, St. Louis, MO, USA., Pruesse E; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Rasmussen LB; Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark., Rivers A; Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA., Robeson MS 2nd; College of Medicine, Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA., Rosenthal P; Department of Biological Sciences, Webster University, St. Louis, MO, USA., Segata N; Centre for Integrative Biology, University of Trento, Trento, Italy., Shaffer M; Computational Bioscience Program, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.; Department of Medicine, Division of Biomedical Informatics and Personalized Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA., Shiffer A; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Sinha R; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Song SJ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Spear JR; Department of Civil and Environmental Engineering, Colorado School of Mines, Golden, CO, USA., Swafford AD; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Thompson LR; Department of Biological Sciences and Northern Gulf Institute, University of Southern Mississippi, Hattiesburg, MS, USA.; Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, La Jolla, CA, USA., Torres PJ; Department of Biology, San Diego State University, San Diego, CA, USA., Trinh P; Department of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA, USA., Tripathi A; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Division of Biological Sciences, University of California San Diego, San Diego, CA, USA., Turnbaugh PJ; Department of Microbiology and Immunology, University of California San Francisco, San Francisco, CA, USA., Ul-Hasan S; Quantitative and Systems Biology Graduate Program, University of California Merced, Merced, CA, USA., van der Hooft JJJ; Bioinformatics Group, Wageningen University, Wageningen, the Netherlands., Vargas F; Division of Biological Sciences, University of California San Diego, San Diego, CA, USA., Vázquez-Baeza Y; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Vogtmann E; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., von Hippel M; Department of Mathematics, University of Arizona, Tucson, AZ, USA., Walters W; Department of Microbiome Science, Max Planck Institute for Developmental Biology, Tübingen, Germany., Wan Y; Metabolic Epidemiology Branch, National Cancer Institute, Rockville, MD, USA., Wang M; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, San Diego, CA, USA., Warren J; National Laboratory Service, Environment Agency, Starcross, UK., Weber KC; Agricultural Research Service, Genomics and Bioinformatics Research Unit, United States Department of Agriculture, Gainesville, FL, USA.; College of Agriculture and Life Sciences, University of Florida, Gainesville, FL, USA., Williamson CHD; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Willis AD; Department of Biostatistics, University of Washington, Seattle, WA, USA., Xu ZZ; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Zaneveld JR; School of STEM, Division of Biological Sciences, University of Washington Bothell, Bothell, WA, USA., Zhang Y; Merck & Co. Inc., Kenilworth, NJ, USA., Zhu Q; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA., Knight R; Department of Pediatrics, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Caporaso JG; Center for Applied Microbiome Science, Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. greg.caporaso@nau.edu.; Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA. greg.caporaso@nau.edu.

المصدر: Nature biotechnology [Nat Biotechnol] 2019 Aug; Vol. 37 (8), pp. 852-857.

نوع المنشور: Letter; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

بيانات الدورية: Publisher: Nature America Publishing Country of Publication: United States NLM ID: 9604648 Publication Model: Print Cited Medium: Internet ISSN: 1546-1696 (Electronic) Linking ISSN: 10870156 NLM ISO Abbreviation: Nat Biotechnol Subsets: MEDLINE

مواضيع طبية MeSH: Computational Biology* , Data Science* , Microbiota* , Software*, Databases, Factual ; Humans

المؤلفون: Pollock FJ; Department of Biology, Pennsylvania State University, 208 Mueller Lab, University Park, State College, PA, 16802, USA., McMinds R; Department of Microbiology, Oregon State University, 226 Nash Hall, Corvallis, OR, 97331, USA., Smith S; Department of Biology, Pennsylvania State University, 208 Mueller Lab, University Park, State College, PA, 16802, USA., Bourne DG; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia.; Australian Institute of Marine Science, Townsville, QLD, 4810, Australia., Willis BL; College of Science and Engineering, James Cook University, Townsville, QLD, 4811, Australia.; ARC Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD, 4811, Australia., Medina M; Department of Biology, Pennsylvania State University, 208 Mueller Lab, University Park, State College, PA, 16802, USA.; Smithsonian Tropical Research Institute, Smithsonian Institution, 9100 Panama City PL, Washington, DC, 20521, USA., Thurber RV; Department of Microbiology, Oregon State University, 226 Nash Hall, Corvallis, OR, 97331, USA., Zaneveld JR; Division of Biological Sciences, Bothell, School of Science, Technology, Engineering, and Mathematics, University of Washington, UWBB-277, Bothell, WA, 98011, USA. zaneveld@gmail.com.

المصدر: Nature communications [Nat Commun] 2018 Nov 22; Vol. 9 (1), pp. 4921. Date of Electronic Publication: 2018 Nov 22.

نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

مواضيع طبية MeSH: Anthozoa/*genetics , Anthozoa/*microbiology , Archaea/*genetics , Bacteria/*genetics , Microbiota/*genetics, Animals ; Anthozoa/classification ; Archaea/classification ; Australia ; Bacteria/classification ; Coral Reefs ; DNA, Mitochondrial/genetics ; Geography ; Phylogeny ; RNA, Ribosomal/genetics ; RNA, Ribosomal, 16S/genetics ; Sequence Analysis, DNA ; Symbiosis

المؤلفون: Trinh P; Department of Environmental and Occupational Health Sciences, School of Public Health, University of Washington, Seattle, WA, United States., Zaneveld JR; Division of Biological Sciences, School of Science, Technology, Education, and Mathematics, University of Washington, Bothell, WA, United States., Safranek S; Health Sciences Library, University of Washington, Seattle, WA, United States., Rabinowitz PM; Department of Environmental and Occupational Health Sciences, School of Public Health, University of Washington, Seattle, WA, United States.

المصدر: Frontiers in public health [Front Public Health] 2018 Aug 30; Vol. 6, pp. 235. Date of Electronic Publication: 2018 Aug 30 (Print Publication: 2018).

نوع المنشور: Journal Article; Review

بيانات الدورية: Publisher: Frontiers Editorial Office Country of Publication: Switzerland NLM ID: 101616579 Publication Model: eCollection Cited Medium: Print ISSN: 2296-2565 (Print) Linking ISSN: 22962565 NLM ISO Abbreviation: Front Public Health Subsets: PubMed not MEDLINE

المؤلفون: Knight R; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu., Vrbanac A; Biomedical Sciences Graduate Program, University of California San Diego, La Jolla, CA, USA., Taylor BC; Biomedical Sciences Graduate Program, University of California San Diego, La Jolla, CA, USA., Aksenov A; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Callewaert C; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Center for Microbial Ecology and Technology, Ghent University, Ghent, Belgium., Debelius J; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Gonzalez A; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Kosciolek T; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., McCall LI; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Melnik AV; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Morton JT; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Navas J; Department of Computer Science and Engineering, University of California San Diego, La Jolla, CA, USA., Quinn RA; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Sanders JG; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Swafford AD; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA., Thompson LR; Department of Biological Sciences and Northern Gulf Institute, University of Southern Mississippi, Hattiesburg, MS, USA.; Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, stationed at Southwest Fisheries Science Center, National Marine Fisheries Service, La Jolla, CA, USA., Tripathi A; Division of Biological Sciences, University of California, San Diego, La Jolla, CA, USA., Xu ZZ; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Zaneveld JR; Division of Biological Sciences, School of Science Technology Engineering and Math, University of Washington Bothell, Bothell, WA, USA., Zhu Q; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Caporaso JG; Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA., Dorrestein PC; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.

المصدر: Nature reviews. Microbiology [Nat Rev Microbiol] 2018 Jul; Vol. 16 (7), pp. 410-422.

نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review

بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101190261 Publication Model: Print Cited Medium: Internet ISSN: 1740-1534 (Electronic) Linking ISSN: 17401526 NLM ISO Abbreviation: Nat Rev Microbiol Subsets: MEDLINE

مواضيع طبية MeSH: Bacteria/*genetics , Metagenomics/*methods , Microbiota/*genetics, Animals ; Environmental Microbiology ; Humans ; Reproducibility of Results