المؤلفون: Natalya Yutin, Pascal Mutz, Mart Krupovic, Eugene V. Koonin

المصدر: mBio, Vol 15, Iss 7 (2024)

مصطلحات موضوعية: virus evolution, Nucleocytoviricota, double jelly-roll fold, rolling circle replication, HUH superfamily endonucleases, AlphaFold, Microbiology, QR1-502

وصف الملف: electronic resource

Relation: https://doaj.org/toc/2150-7511

URL الوصول: https://doaj.org/article/1c155c865d2347a99b1a5a42b6dd24eb

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المؤلفون: Anamarija Butkovic, Simona Kraberger, Zoe Smeele, Darren P Martin, Kara Schmidlin, Rafaela S Fontenele, Michelle R Shero, Roxanne S Beltran, Amy L Kirkham, Maketalena Aleamotu’a, Jennifer M Burns, Eugene V Koonin, Arvind Varsani, Mart Krupovic

المساهمون: Virologie des archées - Archaeal Virology, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Arizona State University [Tempe] (ASU), University of Cape Town, Woods Hole Oceanographic Institution (WHOI), University of California [Santa Cruz] (UC Santa Cruz), University of California (UC), US Fish and Wildlife Service, Newcastle University [Newcastle], Texas Tech University [Lubbock] (TTU), National Center for Biotechnology Information (NCBI), A.B. was supported by a post-doctoral fellowship from Foundation pour la Recherche Mèdicale (grant number SPF202110014092). M.K. was supported by a grant from the l’Agence Nationale de la Recherche (ANR-20-CE20-0009-02). A.L.K. and R.S.B. were supported by Institutional Development Awards (IDeA) Networks of Biomedical Research Excellence Assistantships (grant number P20GM103395) from the National Institute of General Medical Sciences of the National Institutes of Health (NIH). E.V.K. was supported by the Intramural Research Program of the NIH (National Library of Medicine).Weddell seal samples were collected under National Marine Fisheries Service Marine Mammal permit #17411, Antarctic Conservation Act permit #2014-003, and the University of Alaska Anchorage and University of Alaska Fairbanks’s Institutional Animal Care and Use Committee approvals #419971 and #854089, with funding from the National Science Foundation grant ANT-1246463 to J.M.B.The molecular work described in this study is supported by the Center of Evolution and Medicine Venture Fund (Center of Evolution and Medicine, Arizona State University, USA) grant awarded to A.V., ANR-20-CE20-0009,VIROMET,Devoiler le virome des archées methanogenes(2020)

المصدر: Virus Evolution
Virus Evolution, 2023, 9 (1), pp.vead035. ⟨10.1093/ve/vead035⟩

مصطلحات موضوعية: virus evolution, Commensaviricota, jelly-roll fold, Virology, structural modelling, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, taxonomy and classification, Anellovirus, Microbiology, capsid proteins

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::db323aeeca9d1a26a83ac9d5d0eab6a2
https://doi.org/10.1093/ve/vead035

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المؤلفون: Sevvana, Madhumati, Klose, Thomas, Rossmann, Michael G.

المصدر: Reference Module in Life Sciences

مصطلحات موضوعية: Icosahedral viruses, viruses, Plant viruses, Watson and crick, HK97 fold, Article, T-number, Virus symmetry, Capsid assembly, Bacteriophages, Caspar and klug, Human viruses, CryoEM, Enveloped viruses, Giant viruses, Jelly-roll fold, X-ray crystallography

URL الوصول: https://explore.openaire.eu/search/publication?articleId=pmc_________::0e38f067500b0a1ad03b9bee13105bcc
http://europepmc.org/articles/PMC7567489

المؤلفون: Hashimoto, H.

المصدر: Cellular and Molecular Life Sciences CMLS. December 2006 63(24):2954-2967

المؤلفون: Harry Brumer, Vincent Lombard, Nicolas Terrapon, Mirjam Czjzek, Alexander Holm Viborg, Bernard Henrissat, Gurvan Michel

المصدر: Journal of Biological Chemistry 44 (294), 15973-15986. (2019)
The Journal of Biological Chemistry
Journal of Biological Chemistry

مصطلحات موضوعية: 0301 basic medicine, CAZy, Subfamily, Glycoside Hydrolases, beta-sandwich, Hidden Markov Model (HMM), Computational biology, Biology, Biochemistry, Evolution, Molecular, Fungal Proteins, carbohydrate-active enzymes (CAZymes), 03 medical and health sciences, Protein sequencing, Bacterial Proteins, Sequence Analysis, Protein, Phylogenetics, Catalytic Domain, structural biology, glycoside hydrolase, protein evolution, Glycomics, Molecular Biology, Phylogeny, Sequence (medicine), 030102 biochemistry & molecular biology, Phylogenetic tree, sequence similarity networks (SSN), Cell Biology, Enzyme structure, enzyme structure, phylogenetics, beta-jelly-roll fold, 030104 developmental biology, Structural biology, Enzymology, Algorithms, MULTIPLE SEQUENCE ALIGNMENT, CARBOHYDRATE-ACTIVE ENZYMES, XYLOGLUCAN ENDO-TRANSGLYCOSYLASES, CELL-WALL, KAPPA-CARRAGEENASE, PROTEIN, FEATURES, INSIGHT, TOOL, DEGRADATION

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce1309e535f5dc63faab684824cbff76
http://prodinra.inra.fr/record/494230

المؤلفون: Viborg, Alexander Holm, Terrapon, Nicolas, Lombard, Vincent, Michel, Gurvan, Czjzek, Mirjam, Henrissat, Bernard, Brumer, Harry

المساهمون: University of British Columbia (UBC), Architecture et fonction des macromolécules biologiques (AFMB), Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), Genome Canada 10405 Ontario Genomics Genome Quebec Genome British Columbia French National Research Agency (ANR) ANR-14-CE06-0017 ANR-17-CE20-0032 Novo Nordisk Foundation French National Research Agency (ANR) ANR-10-BTBR-04, Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA), ANR-17-CE20-0032,PULmarin,Criblage fonctionnel des loci impliqués dans la dégradation des polysaccharides marins(2017)

المصدر: Journal of Biological Chemistry
Journal of Biological Chemistry, In press, 294 (44), pp.15973-15986. ⟨10.1074/jbc.RA119.010619⟩
Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, In press, ⟨10.1074/jbc.RA119.010619⟩
Journal of Biological Chemistry, American Society for Biochemistry and Molecular Biology, In press, 294 (44), pp.15973-15986. ⟨10.1074/jbc.RA119.010619⟩

مصطلحات موضوعية: phylogenetics, carbohydrate-active enzymes (CAZymes), [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM], beta-jelly-roll fold, [SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM], beta-sandwich, sequence similarity networks (SSN), structural biology, glycoside hydrolase, Hidden Markov Model (HMM), protein evolution, enzyme structure

URL الوصول: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::08b43e3efa218450f8f332a7362f408b
https://hal.science/hal-02291008

المؤلفون: Ranjeeta Gadde, Shimoga Rangappa Sheela, Dayanand Cd

المصدر: Journal of Circulating Biomarkers

مصطلحات موضوعية: 0301 basic medicine, Signal peptide, Glycan, Clinical Biochemistry, syncytiotrophoblast, Review, eclampsia, preeclampsia, 03 medical and health sciences, 0302 clinical medicine, Syncytiotrophoblast, medicine, Receptor, Placental protein 13, jelly roll fold, 030219 obstetrics & reproductive medicine, biology, Chemistry, Binding protein, Endoplasmic reticulum, Biochemistry (medical), Placentation, Microvesicles, Cell biology, 030104 developmental biology, medicine.anatomical_structure, biology.protein

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7c6065b64465e3ee083f2a0e6b8e90e3
https://pubmed.ncbi.nlm.nih.gov/30023011

المؤلفون: Andrew P. Yeh, John Wooley, Edward Nigoghossian, Qingping Xu, Christine B Trame, Gye Won Han, Kevin K. Jin, Dana Weekes, Kyle Ellrott, David Marciano, Lian Duan, Scott A. Lesley, Lukasz Jaroszewski, Debanu Das, Ashley M. Deacon, Linda Okach, Herbert L. Axelrod, Hsiu-Ju Chiu, Abhinav Kumar, Thomas Clayton, Connie Chen, Heath E. Klock, Marc André Elsliger, Carol L. Farr, Henry van den Bedem, Andrew T. Morse, Mitchell D. Miller, Anna Grzechnik, Daniel McMullan, Dennis Carlton, Keith O. Hodgson, Joanna C Grant, Winnie W Lam, Amanda Nopakun, Polat Abdubek, Tiffany Wooten, Julie Feuerhelm, Sanjay Krishna, Michelle Chiu, Adam Godzik, Marc C. Deller, Tamara Astakhova, Constantina Bakolitsa, Xiaohui Cai, Piotr Kozbial, Henry J Tien, Ron Reyes, Ian A. Wilson, Christina Puckett, Mark W. Knuth

المصدر: Acta crystallographica. Section F, Structural biology and crystallization communications, vol 66, iss Pt 10
Acta Crystallographica Section F: Structural Biology and Crystallization Communications

مصطلحات موضوعية: Models, Molecular, gut microbiome, Crystallography, X-Ray, Biochemistry, fluids and secretions, Protein structure, Models, Structural Biology, polycyclic compounds, Bacteroides, Peptide sequence, 0303 health sciences, Crystallography, Human Gut Microbiome, 030302 biochemistry & molecular biology, Biological Sciences, Condensed Matter Physics, immunoglobulin-like fold, GenBank, Carbohydrate Metabolism, Bacteroides thetaiotaomicron, Protein Structure, Protein family, 1.1 Normal biological development and functioning, Molecular Sequence Data, Carbohydrates, Biophysics, Sequence alignment, Biology, digestive system, Structural genomics, 03 medical and health sciences, jelly-roll fold, Bacterial Proteins, Underpinning research, Genetics, Amino Acid Sequence, Binding site, Structural Homology, 030304 developmental biology, Binding Sites, Protein, Molecular, structural genomics, Protein Structure, Tertiary, carbohydrates (lipids), sugars, Structural Homology, Protein, Chemical Sciences, X-Ray, bacteria, Sequence Alignment, Tertiary

وصف الملف: application/pdf

URL الوصول: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bebb537363ef47ed53911e7dcd292f69
https://doi.org/10.1107/s1744309110028228