دورية أكاديمية

NCBI GEO: archive for functional genomics data sets--update.

التفاصيل البيبلوغرافية
العنوان: NCBI GEO: archive for functional genomics data sets--update.
المؤلفون: Barrett T; National Center for Biotechnology Information, National Library of Medicine and Molecular Genetics Section, Genetics Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, USA. barrett@ncbi.nlm.nih.gov, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Holko M, Yefanov A, Lee H, Zhang N, Robertson CL, Serova N, Davis S, Soboleva A
المصدر: Nucleic acids research [Nucleic Acids Res] 2013 Jan; Vol. 41 (Database issue), pp. D991-5. Date of Electronic Publication: 2012 Nov 27.
نوع المنشور: Journal Article; Research Support, N.I.H., Intramural
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
أسماء مطبوعة: Publication: 1992- : Oxford : Oxford University Press
Original Publication: London, Information Retrieval ltd.
مواضيع طبية MeSH: Databases, Genetic* , Gene Expression Profiling* , Genomics*, High-Throughput Nucleotide Sequencing ; Internet ; Oligonucleotide Array Sequence Analysis
مستخلص: The Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/) is an international public repository for high-throughput microarray and next-generation sequence functional genomic data sets submitted by the research community. The resource supports archiving of raw data, processed data and metadata which are indexed, cross-linked and searchable. All data are freely available for download in a variety of formats. GEO also provides several web-based tools and strategies to assist users to query, analyse and visualize data. This article reports current status and recent database developments, including the release of GEO2R, an R-based web application that helps users analyse GEO data.
References: Nat Biotechnol. 2010 Oct;28(10):1045-8. (PMID: 20944595)
Nucleic Acids Res. 2002 Jan 1;30(1):207-10. (PMID: 11752295)
J Cell Biochem. 2010 May 15;110(2):372-81. (PMID: 20213684)
BMC Bioinformatics. 2007 Oct 30;8:423. (PMID: 17971238)
Nature. 2012 Jul 18;487(7407):282-3. (PMID: 22810669)
Nature. 2002 Sep 26;419(6905):323. (PMID: 12352992)
Nucleic Acids Res. 2011 Jan;39(Database issue):D908-12. (PMID: 21075792)
Genome Biol. 2004;5(10):R80. (PMID: 15461798)
Bioinformatics. 2007 Jul 15;23(14):1846-7. (PMID: 17496320)
Nucleic Acids Res. 2009 Jan;37(Database issue):D885-90. (PMID: 18940857)
Nucleic Acids Res. 2011 Jan;39(Database issue):D1002-4. (PMID: 21071405)
Nucleic Acids Res. 2010 Jan;38(Database issue):D870-1. (PMID: 19965774)
Nature. 2011 May 19;473(7347):285. (PMID: 21593852)
Nature. 2012 Sep 6;489(7414):57-74. (PMID: 22955616)
Nucleic Acids Res. 2011 Jan;39(Database issue):D1005-10. (PMID: 21097893)
Nucleic Acids Res. 2010 Jan;38(Database issue):D492-6. (PMID: 19854944)
Nat Genet. 2001 Dec;29(4):365-71. (PMID: 11726920)
Nucleic Acids Res. 2012 Jan;40(Database issue):D57-63. (PMID: 22139929)
Stat Appl Genet Mol Biol. 2004;3:Article3. (PMID: 16646809)
معلومات مُعتمدة: United States Intramural NIH HHS
تواريخ الأحداث: Date Created: 20121130 Date Completed: 20130513 Latest Revision: 20230112
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC3531084
DOI: 10.1093/nar/gks1193
PMID: 23193258
قاعدة البيانات: MEDLINE
الوصف
تدمد:1362-4962
DOI:10.1093/nar/gks1193