دورية أكاديمية
ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems.
| العنوان: | ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems. |
|---|---|
| المؤلفون: | Oehmen CS; Pacific Northwest National Laboratory, Richland, WA 99352, USA. christopher.oehmen@pnl.gov, Baxter DJ |
| المصدر: | Bioinformatics (Oxford, England) [Bioinformatics] 2013 Mar 15; Vol. 29 (6), pp. 797-8. Date of Electronic Publication: 2013 Jan 29. |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S. |
| اللغة: | English |
| بيانات الدورية: | Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: Oxford : Oxford University Press, c1998- |
| مواضيع طبية MeSH: | Software*, Sequence Alignment/*methods, Algorithms ; Computational Biology/methods |
| مستخلص: | Motivation: BLAST remains one of the most widely used tools in computational biology. The rate at which new sequence data is available continues to grow exponentially, driving the emergence of new fields of biological research. At the same time, multicore systems and conventional clusters are more accessible. ScalaBLAST has been designed to run on conventional multiprocessor systems with an eye to extreme parallelism, enabling parallel BLAST calculations using >16 000 processing cores with a portable, robust, fault-resilient design that introduces little to no overhead with respect to serial BLAST. |
| References: | J Mol Biol. 1990 Oct 5;215(3):403-10. (PMID: 2231712) |
| تواريخ الأحداث: | Date Created: 20130131 Date Completed: 20130923 Latest Revision: 20211021 |
| رمز التحديث: | 20240628 |
| مُعرف محوري في PubMed: | PMC3597145 |
| DOI: | 10.1093/bioinformatics/btt013 |
| PMID: | 23361326 |
| قاعدة البيانات: | MEDLINE |
كن أول من يترك تعليقا!