دورية أكاديمية

A bacterial homolog YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity.

التفاصيل البيبلوغرافية
العنوان: A bacterial homolog YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity.
المؤلفون: Osterman IA; a Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology ; Lomonosov Moscow State University ; Moscow , Russia., Evfratov SA; a Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology ; Lomonosov Moscow State University ; Moscow , Russia., Dzama MM; a Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology ; Lomonosov Moscow State University ; Moscow , Russia., Pletnev PI; a Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology ; Lomonosov Moscow State University ; Moscow , Russia., Kovalchuk SI; b Research Institute for Physical-Chemical Medicine of Ministry of Public Health of Russian Federation ; Moscow , Russia., Butenko IO; b Research Institute for Physical-Chemical Medicine of Ministry of Public Health of Russian Federation ; Moscow , Russia., Pobeguts OV; b Research Institute for Physical-Chemical Medicine of Ministry of Public Health of Russian Federation ; Moscow , Russia., Golovina AY; a Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology ; Lomonosov Moscow State University ; Moscow , Russia., Govorun VM; b Research Institute for Physical-Chemical Medicine of Ministry of Public Health of Russian Federation ; Moscow , Russia., Bogdanov AA; a Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology ; Lomonosov Moscow State University ; Moscow , Russia., Sergiev PV; a Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology ; Lomonosov Moscow State University ; Moscow , Russia., Dontsova OA; a Department of Chemistry and A.N. Belozersky Institute of Physico-Chemical Biology ; Lomonosov Moscow State University ; Moscow , Russia.
المصدر: RNA biology [RNA Biol] 2015; Vol. 12 (9), pp. 966-71.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Taylor & Francis Country of Publication: United States NLM ID: 101235328 Publication Model: Print Cited Medium: Internet ISSN: 1555-8584 (Electronic) Linking ISSN: 15476286 NLM ISO Abbreviation: RNA Biol Subsets: MEDLINE
أسماء مطبوعة: Publication: 2015- : Philadelphia, PA : Taylor & Francis
Original Publication: Georgetown, TX : Landes Bioscience,
مواضيع طبية MeSH: Gene Expression Regulation* , Peptide Chain Initiation, Translational*, Escherichia coli Proteins/*metabolism , Eukaryotic Initiation Factors/*metabolism , Peptide Initiation Factors/*metabolism , RNA, Messenger/*genetics , RNA, Messenger/*metabolism , Stress, Physiological/*genetics, Escherichia coli/genetics ; Escherichia coli/growth & development ; Escherichia coli/metabolism ; Protein Biosynthesis ; Proteome
مستخلص: YciH is a bacterial protein, homologous to eukaryotic translation initiation factor eIF1. Preceding evidence obtained with the aid of in vitro translation initiation system suggested that it may play a role of a translation initiation factor, ensuring selection against suboptimal initiation complexes. Here we studied the effect of Escherichia coli yciH gene inactivation on translation of model mRNAs. Neither the translation efficiency of leaderless mRNAs, nor mRNAs with non AUG start codons, was found to be affected by YciH in vivo. Comparative proteome analysis revealed that yciH gene knockout leads to a more than fold2- increase in expression of 66 genes and a more than fold2- decrease in the expression of 20 genes. Analysis of these gene sets allowed us to suggest a role of YciH as an inhibitor of translation in a stress response rather than the role of a translation initiation factor.
References: Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6640-5. (PMID: 10829079)
Proc Natl Acad Sci U S A. 2000 Jun 6;97(12):6652-7. (PMID: 10823905)
DNA Res. 2005;12(5):291-9. (PMID: 16769691)
Antimicrob Agents Chemother. 2012 Apr;56(4):1774-83. (PMID: 22252829)
Nature. 2012 Apr 26;484(7395):538-41. (PMID: 22456704)
Crit Rev Biochem Mol Biol. 2012 Jul-Aug;47(4):334-48. (PMID: 22515367)
Nucleic Acids Res. 2013 Jan;41(Database issue):D605-12. (PMID: 23143106)
Nucleic Acids Res. 2013 Jan 7;41(1):474-86. (PMID: 23093605)
Nat Struct Mol Biol. 2013 Aug;20(8):1015-7. (PMID: 23851459)
Nature. 2013 Aug 15;500(7462):307-11. (PMID: 23873042)
Nucleic Acids Res. 2014 Jan;42(Database issue):D859-64. (PMID: 24185699)
Annu Rev Biochem. 2014;83:779-812. (PMID: 24499181)
Cell. 2014 Oct 23;159(3):597-607. (PMID: 25417110)
J Proteomics. 2014 Sep 23;109:322-31. (PMID: 25063446)
BMC Genomics. 2015;16:78. (PMID: 25756599)
Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7029-36. (PMID: 11416183)
Mol Cell. 2001 Oct;8(4):855-64. (PMID: 11684020)
J Bacteriol. 2003 Oct;185(19):5673-84. (PMID: 13129938)
Genes Dev. 2003 Nov 15;17(22):2786-97. (PMID: 14600024)
J Mol Biol. 1986 Dec 20;192(4):767-80. (PMID: 2438418)
J Biol Chem. 1987 Jul 25;262(21):10239-45. (PMID: 2956254)
Biochemistry. 1990 Jun 26;29(25):5881-9. (PMID: 2200518)
Proc Natl Acad Sci U S A. 1998 Jan 6;95(1):224-8. (PMID: 9419357)
EMBO J. 1999 May 4;18(9):2631-7. (PMID: 10228174)
Nucleic Acids Res. 1999 Oct 15;27(20):4018-27. (PMID: 10497266)
Mol Cell. 2005 Jan 21;17(2):265-75. (PMID: 15664195)
EMBO J. 2006 Jan 11;25(1):196-210. (PMID: 16362046)
Mol Syst Biol. 2006;2:2006.0008. (PMID: 16738554)
فهرسة مساهمة: Keywords: initiation factor; initiation fidelity; translation; yciH
المشرفين على المادة: 0 (Escherichia coli Proteins)
0 (Eukaryotic Initiation Factors)
0 (Peptide Initiation Factors)
0 (Proteome)
0 (RNA, Messenger)
0 (YciH protein, E coli)
تواريخ الأحداث: Date Created: 20150716 Date Completed: 20160712 Latest Revision: 20181113
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC4615754
DOI: 10.1080/15476286.2015.1069464
PMID: 26177339
قاعدة البيانات: MEDLINE