دورية أكاديمية
Genome-Wide Association Mapping of Barley Yellow Dwarf Virus Tolerance in Spring Oat (Avena sativa L.).
| العنوان: | Genome-Wide Association Mapping of Barley Yellow Dwarf Virus Tolerance in Spring Oat (Avena sativa L.). |
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| المؤلفون: | Foresman BJ; Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America., Oliver RE; Department of Plant Sciences, North Dakota State University, Fargo, North Dakota, United States of America., Jackson EW; General Mills Crop Bioscience, Manhattan, Kansas, United States of America., Chao S; USDA-ARS Cereal Crops Research Unit, Fargo, North Dakota, United States of America., Arruda MP; Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America., Kolb FL; Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America. |
| المصدر: | PloS one [PLoS One] 2016 May 13; Vol. 11 (5), pp. e0155376. Date of Electronic Publication: 2016 May 13 (Print Publication: 2016). |
| نوع المنشور: | Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't |
| اللغة: | English |
| بيانات الدورية: | Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: San Francisco, CA : Public Library of Science |
| مواضيع طبية MeSH: | Genome-Wide Association Study*, Avena/*genetics , Avena/*virology , Disease Resistance/*genetics , Luteovirus/*physiology , Plant Diseases/*genetics , Plant Diseases/*virology, Alleles ; Chromosome Mapping ; Genetics, Population ; Genome, Plant ; Genotype ; Haplotypes ; Phenotype ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Quantitative Trait, Heritable |
| مستخلص: | Barley yellow dwarf viruses (BYDVs) are responsible for the disease barley yellow dwarf (BYD) and affect many cereals including oat (Avena sativa L.). Until recently, the molecular marker technology in oat has not allowed for many marker-trait association studies to determine the genetic mechanisms for tolerance. A genome-wide association study (GWAS) was performed on 428 spring oat lines using a recently developed high-density oat single nucleotide polymorphism (SNP) array as well as a SNP-based consensus map. Marker-trait associations were performed using a Q-K mixed model approach to control for population structure and relatedness. Six significant SNP-trait associations representing two QTL were found on chromosomes 3C (Mrg17) and 18D (Mrg04). This is the first report of BYDV tolerance QTL on chromosome 3C (Mrg17) and 18D (Mrg04). Haplotypes using the two QTL were evaluated and distinct classes for tolerance were identified based on the number of favorable alleles. A large number of lines carrying both favorable alleles were observed in the panel. |
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| تواريخ الأحداث: | Date Created: 20160514 Date Completed: 20170707 Latest Revision: 20240327 |
| رمز التحديث: | 20240327 |
| مُعرف محوري في PubMed: | PMC4866777 |
| DOI: | 10.1371/journal.pone.0155376 |
| PMID: | 27175781 |
| قاعدة البيانات: | MEDLINE |
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