دورية أكاديمية
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests.
| العنوان: | BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests. |
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| المؤلفون: | Komljenovic A; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland., Roux J; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland., Robinson-Rechavi M; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland., Bastian FB; Department of Ecology and Evolution, University of Lausanne, Lausanne, Switzerland.; SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland. |
| المصدر: | F1000Research [F1000Res] 2016 Nov 23; Vol. 5, pp. 2748. Date of Electronic Publication: 2016 Nov 23 (Print Publication: 2016). |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: F1000 Research Ltd Country of Publication: England NLM ID: 101594320 Publication Model: eCollection Cited Medium: Internet ISSN: 2046-1402 (Electronic) Linking ISSN: 20461402 NLM ISO Abbreviation: F1000Res Subsets: PubMed not MEDLINE |
| أسماء مطبوعة: | Original Publication: London : F1000 Research Ltd |
| مستخلص: | BgeeDB is a collection of functions to import into R re-annotated, quality-controlled and reprocessed expression data available in the Bgee database. This includes data from thousands of wild-type healthy samples of multiple animal species, generated with different gene expression technologies (RNA-seq, Affymetrix microarrays, expressed sequence tags, and in situ hybridizations). BgeeDB facilitates downstream analyses, such as gene expression analyses with other Bioconductor packages. Moreover, BgeeDB includes a new gene set enrichment test for preferred localization of expression of genes in anatomical structures ("TopAnat"). Along with the classical Gene Ontology enrichment test, this test provides a complementary way to interpret gene lists. Availability: http://www.bioconductor.org/packages/BgeeDB/. Competing Interests: Competing interests: No competing interests were disclosed. |
| فهرسة مساهمة: | Keywords: Bioconductor; Collective Data Access; Gene Enrichment Analysis; Gene expression; R Package |
| تواريخ الأحداث: | Date Created: 20181124 Latest Revision: 20191120 |
| رمز التحديث: | 20231215 |
| مُعرف محوري في PubMed: | PMC6113886 |
| DOI: | 10.12688/f1000research.9973.1 |
| PMID: | 30467516 |
| قاعدة البيانات: | MEDLINE |
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