دورية أكاديمية
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BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data.

التفاصيل البيبلوغرافية
العنوان: BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data.
المؤلفون: Kolpakov F; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation., Akberdin I; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Novosibirsk State University, Novosibirsk 630090, Russian Federation., Kashapov T; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation., Kiselev L; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation., Kolmykov S; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation.; Institute of Cytology and Genetics SB RAS, Novosibirsk 630090, Russian Federation., Kondrakhin Y; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation., Kutumova E; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation., Mandrik N; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation., Pintus S; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation., Ryabova A; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation., Sharipov R; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Novosibirsk State University, Novosibirsk 630090, Russian Federation., Yevshin I; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; Institute of Computational Technologies SB RAS, Novosibirsk 630090, Russian Federation., Kel A; BIOSOFT.RU, LLC, Novosibirsk 630090, Russian Federation.; geneXplain GmbH, 38302 Wolfenbüttel, Germany.; Institute of Chemical Biology and Fundamental Medicine, SB RAS, Novosibirsk 630090, Russian Federation.
المصدر: Nucleic acids research [Nucleic Acids Res] 2019 Jul 02; Vol. 47 (W1), pp. W225-W233.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
أسماء مطبوعة: Publication: 1992- : Oxford : Oxford University Press
Original Publication: London, Information Retrieval ltd.
مواضيع طبية MeSH: Databases, Factual* , Internet* , Models, Biological* , Software* , Systems Biology*, Animals ; Humans
مستخلص: BioUML (homepage: http://www.biouml.org, main public server: https://ict.biouml.org) is a web-based integrated environment (platform) for systems biology and the analysis of biomedical data generated by omics technologies. The BioUML vision is to provide a computational platform to build virtual cell, virtual physiological human and virtual patient. BioUML spans a comprehensive range of capabilities, including access to biological databases, powerful tools for systems biology (visual modelling, simulation, parameters fitting and analyses), a genome browser, scripting (R, JavaScript) and a workflow engine. Due to integration with the Galaxy platform and R/Bioconductor, BioUML provides powerful possibilities for the analyses of omics data. The plug-in-based architecture allows the user to add new functionalities using plug-ins. To facilitate a user focus on a particular task or database, we have developed several predefined perspectives that display only those web interface elements that are needed for a specific task. To support collaborative work on scientific projects, there is a central authentication and authorization system (https://bio-store.org). The diagram editor enables several remote users to simultaneously edit diagrams.
(© The Author(s) 2019. Published by Oxford University Press on behalf of Nucleic Acids Research.)
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تواريخ الأحداث: Date Created: 20190528 Date Completed: 20200526 Latest Revision: 20200526
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC6602424
DOI: 10.1093/nar/gkz440
PMID: 31131402
قاعدة البيانات: MEDLINE
الوصف
تدمد:1362-4962
DOI:10.1093/nar/gkz440