دورية أكاديمية
أعرض في EDS

Characterization of Nuclear and Mitochondrial Genomes of Two Tobacco Endophytic Fungi Leptosphaerulina chartarum and Curvularia trifolii and Their Contributions to Phylogenetic Implications in the Pleosporales.

التفاصيل البيبلوغرافية
العنوان: Characterization of Nuclear and Mitochondrial Genomes of Two Tobacco Endophytic Fungi Leptosphaerulina chartarum and Curvularia trifolii and Their Contributions to Phylogenetic Implications in the Pleosporales.
المؤلفون: Yuan XL; Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266109, China., Cao M; Marine Science and Engineering College, Qingdao Agricultural University, Qingdao 266109, China., Shen GM; Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266109, China., Zhang HB; Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266109, China., Du YM; Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266109, China., Zhang ZF; Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266109, China., Li Q; Nanyang Tobacco Group Co., Ltd., Nanyang 473000, China., Gao JM; Hubei Provincial Tobacco Company of China National Tobacco Corporation, Wuhan 430000, China., Xue L; Wannan Tobacco Group Co., Ltd., Xuancheng 242000, China., Wang ZP; Marine Science and Engineering College, Qingdao Agricultural University, Qingdao 266109, China., Zhang P; Tobacco Research Institute of Chinese Academy of Agricultural Sciences, Qingdao 266109, China.
المصدر: International journal of molecular sciences [Int J Mol Sci] 2020 Apr 02; Vol. 21 (7). Date of Electronic Publication: 2020 Apr 02.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI, [2000-
مواضيع طبية MeSH: Genome, Fungal* , Genome, Mitochondrial* , Genomics*/methods , Phylogeny*, Ascomycota/*classification , Ascomycota/*genetics , Nicotiana/*microbiology, Ascomycota/isolation & purification ; Evolution, Molecular ; High-Throughput Nucleotide Sequencing ; Sequence Analysis, DNA
مستخلص: The symbiont endophytic fungi in tobacco are highly diverse and difficult to classify. Here, we sequenced the genomes of Curvularia trifolii and Leptosphaerulina chartarum isolated from tobacco plants. Finally, 41.68 Mb and 37.95 Mb nuclear genomes were sequenced for C. trifolii and L. chartarum with the scaffold N50, accounting for 638.94 Kb and 284.12 Kb, respectively. Meanwhile, we obtained 68,926 bp and 59,100 bp for their mitochondrial genomes. To more accurately classify C. trifolii and L. chartarum , we extracted seven nuclear genes and 12 mitochondrial genes from these two genomes and their closely related species. The genes were then used for calculation of evolutionary rates and for phylogenetic analysis. Results showed that it was difficult to achieve consistent results using a single gene due to their different evolutionary rates, while the phylogenetic trees obtained by combining datasets showed stable topologies. It is, therefore, more accurate to construct phylogenetic relationships for endophytic fungi based on multi-gene datasets. This study provides new insights into the distribution and characteristics of endophytic fungi in tobacco.
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معلومات مُعتمدة: 31700295 Natural Science Foundation of China; 2016A02 the Science Foundation for Young Scholars of Institute of Tobacco Research of Chinese Academy of Agricultural Sciences; ASTIP-TRIC05 Agricultural Science and Technology Innovation Program
فهرسة مساهمة: Keywords: endophytic fungi of tobacco; mitogenome; nuclear genes; phylogeny
تواريخ الأحداث: Date Created: 20200408 Date Completed: 20201228 Latest Revision: 20240328
رمز التحديث: 20240329
مُعرف محوري في PubMed: PMC7177214
DOI: 10.3390/ijms21072461
PMID: 32252284
قاعدة البيانات: MEDLINE
الوصف
تدمد:1422-0067
DOI:10.3390/ijms21072461