دورية أكاديمية

An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids.

التفاصيل البيبلوغرافية
العنوان: An Integrated Analysis of miRNA and Gene Expression Changes in Response to an Obesogenic Diet to Explore the Impact of Transgenerational Supplementation with Omega 3 Fatty Acids.
المؤلفون: Corral-Jara KF; Unité de Nutrition Humaine (UNH), Université Clermont Auvergne, Institut National de Recherche pour L'agriculture, L'alimentation et L'environnement (INRAE), Faculté de Médecine, F-63000 Clermont-Ferrand, France., Cantini L; Computational Systems Biology Team, Institut de Biologie de l'Ecole Normale Supérieure, CNRS, INSERM, Ecole Normale Supérieure, Université PSL, 75005 Paris, France., Poupin N; Toxalim (Research Centre in Food Toxicology), Université de Toulouse, INRAE, ENVT, INP-Purpan, UPS, 31027 Toulouse, France., Ye T; GenomEast Platform, Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC), 1 rue Laurent Fries/BP 10142/, 67404 Illkirch, France., Rigaudière JP; Unité de Nutrition Humaine (UNH), Université Clermont Auvergne, Institut National de Recherche pour L'agriculture, L'alimentation et L'environnement (INRAE), Faculté de Médecine, F-63000 Clermont-Ferrand, France., De Saint Vincent S; Unité de Nutrition Humaine (UNH), Université Clermont Auvergne, Institut National de Recherche pour L'agriculture, L'alimentation et L'environnement (INRAE), Faculté de Médecine, F-63000 Clermont-Ferrand, France., Pinel A; Unité de Nutrition Humaine (UNH), Université Clermont Auvergne, Institut National de Recherche pour L'agriculture, L'alimentation et L'environnement (INRAE), Faculté de Médecine, F-63000 Clermont-Ferrand, France., Morio B; CarMeN Laboratory, INSERM U1060, INRAE U1397, Université Lyon 1, 69310 Pierre Bénite, France., Capel F; Unité de Nutrition Humaine (UNH), Université Clermont Auvergne, Institut National de Recherche pour L'agriculture, L'alimentation et L'environnement (INRAE), Faculté de Médecine, F-63000 Clermont-Ferrand, France.
المصدر: Nutrients [Nutrients] 2020 Dec 17; Vol. 12 (12). Date of Electronic Publication: 2020 Dec 17.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI Publishing Country of Publication: Switzerland NLM ID: 101521595 Publication Model: Electronic Cited Medium: Internet ISSN: 2072-6643 (Electronic) Linking ISSN: 20726643 NLM ISO Abbreviation: Nutrients Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI Publishing
مواضيع طبية MeSH: Diet, High-Fat/*adverse effects , Fatty Acids, Omega-3/*administration & dosage , Fatty Acids, Omega-3/*blood , Gene Expression/*drug effects , Metabolic Syndrome/*blood , MicroRNAs/*blood , MicroRNAs/*drug effects, Animals ; Diet, High-Fat/methods ; Dietary Supplements ; Disease Models, Animal ; Liver/metabolism ; Male ; Mice ; Mice, Inbred C57BL
مستخلص: Insulin resistance decreases the ability of insulin to inhibit hepatic gluconeogenesis, a key step in the development of metabolic syndrome. Metabolic alterations, fat accumulation, and fibrosis in the liver are closely related and contribute to the progression of comorbidities, such as hypertension, type 2 diabetes, or cancer. Omega 3 ( n -3) polyunsaturated fatty acids, such as eicosapentaenoic acid (EPA), were identified as potent positive regulators of insulin sensitivity in vitro and in animal models. In the current study, we explored the effects of a transgenerational supplementation with EPA in mice exposed to an obesogenic diet on the regulation of microRNAs (miRNAs) and gene expression in the liver using high-throughput techniques. We implemented a comprehensive molecular systems biology approach, combining statistical tools, such as MicroRNA Master Regulator Analysis pipeline and Boolean modeling to integrate these biochemical processes. We demonstrated that EPA mediated molecular adaptations, leading to the inhibition of miR-34a-5p, a negative regulator of Irs2 as a master regulatory event leading to the inhibition of gluconeogenesis by insulin during the fasting-feeding transition. Omics data integration provided greater biological insight and a better understanding of the relationships between biological variables. Such an approach may be useful for deriving innovative data-driven hypotheses and for the discovery of molecular-biochemical mechanistic links.
References: Gut Microbes. 2013 Jan-Feb;4(1):28-40. (PMID: 23022739)
PLoS One. 2011;6(12):e28502. (PMID: 22174823)
Rev Invest Clin. 2000 Mar-Apr;52(2):194-9. (PMID: 10846444)
Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):3756-61. (PMID: 11259670)
Nature. 2001 Sep 13;413(6852):131-8. (PMID: 11557972)
Hepatology. 2008 Dec;48(6):1810-20. (PMID: 19030170)
Biosystems. 2006 May;84(2):91-100. (PMID: 16434137)
Int J Biol Sci. 2019 Nov 1;15(13):2815-2829. (PMID: 31853220)
Front Physiol. 2019 Feb 05;9:1958. (PMID: 30804813)
Sci Signal. 2013 Nov 05;6(300):ra97. (PMID: 24194584)
Trends Biotechnol. 2016 Apr;34(4):276-290. (PMID: 26806111)
J Lipid Res. 2010 Aug;51(8):2352-61. (PMID: 20410018)
Nucleic Acids Res. 2002 Jan 1;30(1):207-10. (PMID: 11752295)
Nat Med. 2004 May;10(5):530-4. (PMID: 15107844)
Science. 2003 Jun 6;300(5625):1574-7. (PMID: 12791994)
Ann N Y Acad Sci. 2018 Jan;1411(1):21-35. (PMID: 28868790)
Nucleic Acids Res. 2015 Apr 20;43(7):e47. (PMID: 25605792)
J Nutr Biochem. 2018 Aug;58:1-16. (PMID: 29621669)
J Clin Invest. 2016 Jan;126(1):12-22. (PMID: 26727229)
Cell. 1998 Mar 20;92(6):829-39. (PMID: 9529258)
Nutrition. 2017 Sep;41:90-96. (PMID: 28760435)
Prostaglandins Other Lipid Mediat. 2015 Sep;121(Pt A):24-41. (PMID: 26219838)
PPAR Res. 2009;2009:952734. (PMID: 20300478)
Proc Natl Acad Sci U S A. 2019 Mar 5;116(10):4285-4290. (PMID: 30770439)
PLoS Comput Biol. 2017 Nov 3;13(11):e1005752. (PMID: 29099853)
Nucleic Acids Res. 2010 Jul;38(Web Server issue):W132-7. (PMID: 20444866)
J Lipid Res. 2016 Aug;57(8):1382-97. (PMID: 27307576)
Wiley Interdiscip Rev RNA. 2014 Sep-Oct;5(5):697-712. (PMID: 24944010)
Nucleic Acids Res. 2020 Jan 8;48(D1):D127-D131. (PMID: 31504780)
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50. (PMID: 16199517)
Nutrients. 2019 Jan 04;11(1):. (PMID: 30621155)
Physiol Rev. 2004 Apr;84(2):623-47. (PMID: 15044684)
Diabetes. 2003 Sep;52(9):2239-48. (PMID: 12941762)
Nat Commun. 2015 Nov 17;6:8878. (PMID: 27305450)
Bioinformatics. 2010 Jan 1;26(1):136-8. (PMID: 19855105)
Acta Diabetol. 2011 Mar;48(1):61-9. (PMID: 20857148)
Clin Chem. 2008 Jun;54(6):945-55. (PMID: 18436717)
Nucleic Acids Res. 2011 Jan;39(Database issue):D163-9. (PMID: 21071411)
Nat Rev Mol Cell Biol. 2018 Oct;19(10):654-672. (PMID: 30104701)
Eur J Nutr. 2021 Sep;60(6):3143-3157. (PMID: 33543364)
Microbiol Mol Biol Rev. 2015 Dec;79(4):419-35. (PMID: 26424716)
Nature. 2007 Jun 28;447(7148):1130-4. (PMID: 17554337)
Cell Rep. 2019 Feb 19;26(8):2212-2226.e7. (PMID: 30784600)
Nucleic Acids Res. 2000 Jan 1;28(1):27-30. (PMID: 10592173)
J Physiol Biochem. 2014 Jun;70(2):647-58. (PMID: 24371037)
Bioinformatics. 2012 Dec 1;28(23):3147-9. (PMID: 23044543)
Int J Obes (Lond). 2018 Sep;42(9):1544-1555. (PMID: 29717275)
Bioinformatics. 2003 Jan 22;19(2):185-93. (PMID: 12538238)
J Biol Chem. 2010 Apr 23;285(17):12604-11. (PMID: 20185821)
Proc Natl Acad Sci U S A. 2005 Apr 26;102(17):6207-12. (PMID: 15833818)
Blood. 2002 Aug 15;100(4):1340-6. (PMID: 12149216)
PLoS One. 2016 Feb 26;11(2):e0149954. (PMID: 26919700)
Bioinformatics. 2016 May 15;32(10):1502-8. (PMID: 26787660)
J Clin Invest. 2017 Apr 3;127(4):1202-1214. (PMID: 28368286)
Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19926-31. (PMID: 19066218)
Nat Cell Biol. 2004 Apr;6(4):351-7. (PMID: 15048126)
Am J Physiol Endocrinol Metab. 2002 Sep;283(3):E413-22. (PMID: 12169433)
Nat Med. 2006 Jan;12(1):107-13. (PMID: 16327801)
Cell Prolif. 2017 Apr;50(2):. (PMID: 27976431)
Elife. 2015 Aug 12;4:. (PMID: 26267216)
معلومات مُعتمدة: N.A. Sofiproteol
فهرسة مساهمة: Keywords: liver; metabolic syndrome; microRNA; obesity; omega 3 fatty acids; transcriptome
المشرفين على المادة: 0 (Fatty Acids, Omega-3)
0 (MicroRNAs)
تواريخ الأحداث: Date Created: 20201222 Date Completed: 20210902 Latest Revision: 20240330
رمز التحديث: 20240330
مُعرف محوري في PubMed: PMC7765958
DOI: 10.3390/nu12123864
PMID: 33348802
قاعدة البيانات: MEDLINE
الوصف
تدمد:2072-6643
DOI:10.3390/nu12123864