دورية أكاديمية
Genome assembly of Scorias spongiosa and comparative genomics provide insights into ecological adaptation of honeydew-dependent sooty mould fungi.
| العنوان: | Genome assembly of Scorias spongiosa and comparative genomics provide insights into ecological adaptation of honeydew-dependent sooty mould fungi. |
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| المؤلفون: | Zhang H; State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China., Ye L; State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China., Liu Q; State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China., Huang X; State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China. Electronic address: huangxl@fafu.edu.cn. |
| المصدر: | Genomics [Genomics] 2021 Jul; Vol. 113 (4), pp. 2189-2198. Date of Electronic Publication: 2021 May 19. |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't |
| اللغة: | English |
| بيانات الدورية: | Publisher: Academic Press Country of Publication: United States NLM ID: 8800135 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8646 (Electronic) Linking ISSN: 08887543 NLM ISO Abbreviation: Genomics Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: San Diego : Academic Press, [c1987- |
| مواضيع طبية MeSH: | Ascomycota*, Adaptation, Physiological/genetics ; Genome ; Genomics ; Phylogeny |
| مستخلص: | Sooty moulds are fungi of economic importance and with unique lifestyle mainly growing on insect honeydew. However, the lack of genomic data hinders investigation of genetic mechanisms underlying their ecological adaptation. With long-read sequencing technology, we generated the genome of Scorias spongiosa, an extraordinary sooty mould fungus associated with honeydew of colony aphids and producing large fruiting bodies. A 24.21 Mb high-quality genome assembly with a N50 length of 3.37 Mb was obtained. The genome contained 7758 protein coding genes, 97.13% of which were homologous to known genes, and approximately 0.29 Mb repeat sequences. Comparative genomics showed S. spongiosa lost relatively more gene families and contained fewer species-specific genes and gene families, with many CAZyme families and sugar transporters reduced or absent. This study not only promotes understanding of the ecological adaptation of sooty moulds, but also provides valuable genomic data resource for future comparative genomic and genetic studies. (Copyright © 2021 Elsevier Inc. All rights reserved.) |
| فهرسة مساهمة: | Keywords: CAZymes; Capnodiales; Genome evolution; Long-read sequencing; Sooty mould |
| SCR Organism: | Scorias spongiosa |
| تواريخ الأحداث: | Date Created: 20210522 Date Completed: 20220331 Latest Revision: 20220401 |
| رمز التحديث: | 20231215 |
| DOI: | 10.1016/j.ygeno.2021.05.020 |
| PMID: | 34022339 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1089-8646 |
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| DOI: | 10.1016/j.ygeno.2021.05.020 |