دورية أكاديمية
Insights from the cDNA and EST analysis of Antrodia cinnamomea.
| العنوان: | Insights from the cDNA and EST analysis of Antrodia cinnamomea. |
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| المؤلفون: | Li J; National Engineering Research Center of JUNCAO Technology, Fujian Agriculture and orestry University, Fujian, Fuzhou 350002, PR China., Liu Y; National Engineering Research Center of JUNCAO Technology, Fujian Agriculture and orestry University, Fujian, Fuzhou 350002, PR China., Yankey R; National Engineering Research Center of JUNCAO Technology, Fujian Agriculture and orestry University, Fujian, Fuzhou 350002, PR China.; Life Science College, Fujian Agriculture and Forestry University, Fujian, Fuzhou 350002, PR China., Lin D; National Engineering Research Center of JUNCAO Technology, Fujian Agriculture and orestry University, Fujian, Fuzhou 350002, PR China., Lin Z; National Engineering Research Center of JUNCAO Technology, Fujian Agriculture and orestry University, Fujian, Fuzhou 350002, PR China. |
| المصدر: | Bioinformation [Bioinformation] 2021 Jan 31; Vol. 17 (1), pp. 109-118. Date of Electronic Publication: 2021 Jan 31 (Print Publication: 2021). |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Biomedical Informatics Pub. Group Country of Publication: Singapore NLM ID: 101258255 Publication Model: eCollection Cited Medium: Print ISSN: 0973-2063 (Print) Linking ISSN: 09732063 NLM ISO Abbreviation: Bioinformation Subsets: PubMed not MEDLINE |
| أسماء مطبوعة: | Original Publication: [Singapore] : Biomedical Informatics Pub. Group, 2005- |
| مستخلص: | It is of interest to document the insights gleaned from the cDNA and EST analysis of Antrodia cinnamomea (a fungal species). Hence a library of sequences was constructed and analysed using standard procedures to gain new insights. Therefore, 65 ESTs, with size ranging from 300-2000 bp, were constructed. This included 46 ESTs with definite annotation, 18 ESTs were hypothetical and 1 new protein derived from BLAST analysis. We assigned 227 Gene Ontology terms linked to cell composition, transport, catalytic activity, and regulation functions in these sequences. Moreover, 56 matching genes were found in 8 Kyoto Encyclopedia of Genes and Genomes pathways. Data also showed 271 SSRs from Antrodia cinnamomea ESTs with an occurrence frequency of 96.82%. The STRING data analysis showed 29 genes encoded enzymes highly involved in protein-to-protein interactions linked to expression of regulation function. Thus, we documented some insights from the cDNA and EST analysis of Antrodia cinnamomea for further data mining. Competing Interests: All authors declare no conflict of interest. (© 2021 Biomedical Informatics.) |
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| فهرسة مساهمة: | Keywords: Antrodia cinnamomea; EST; GO functional annotation; cDNA; genome wide analysis |
| تواريخ الأحداث: | Date Created: 20210816 Latest Revision: 20230920 |
| رمز التحديث: | 20230920 |
| مُعرف محوري في PubMed: | PMC8340700 |
| DOI: | 10.6026/97320630017109 |
| PMID: | 34393425 |
| قاعدة البيانات: | MEDLINE |
| تدمد: | 0973-2063 |
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| DOI: | 10.6026/97320630017109 |