دورية أكاديمية

Cryo-EM structure provides insights into the dimer arrangement of the O-linked β-N-acetylglucosamine transferase OGT.

التفاصيل البيبلوغرافية
العنوان: Cryo-EM structure provides insights into the dimer arrangement of the O-linked β-N-acetylglucosamine transferase OGT.
المؤلفون: Meek RW; York Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK., Blaza JN; York Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK. jamie.blaza@york.ac.uk., Busmann JA; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada., Alteen MG; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada., Vocadlo DJ; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada., Davies GJ; York Structural Biology Laboratory, Department of Chemistry, University of York, York, YO10 5DD, UK. gideon.davies@york.ac.uk.
المصدر: Nature communications [Nat Commun] 2021 Nov 11; Vol. 12 (1), pp. 6508. Date of Electronic Publication: 2021 Nov 11.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [London] : Nature Pub. Group
مواضيع طبية MeSH: Amino Acids/*metabolism , Chromium/*metabolism , Cryoelectron Microscopy/*methods , Nicotinic Acids/*metabolism, Amino Acids/chemistry ; Chromium/chemistry ; Crystallography, X-Ray ; Glycomics ; Mutation/genetics ; Nicotinic Acids/chemistry ; Protein Structure, Secondary
مستخلص: The O-linked β-N-acetylglucosamine modification is a core signalling mechanism, with erroneous patterns leading to cancer and neurodegeneration. Although thousands of proteins are subject to this modification, only a single essential glycosyltransferase catalyses its installation, the O-GlcNAc transferase, OGT. Previous studies have provided truncated structures of OGT through X-ray crystallography, but the full-length protein has never been observed. Here, we report a 5.3 Å cryo-EM model of OGT. We show OGT is a dimer, providing a structural basis for how some X-linked intellectual disability mutations at the interface may contribute to disease. We observe that the catalytic section of OGT abuts a 13.5 tetratricopeptide repeat unit region and find the relative positioning of these sections deviate from the previously proposed, X-ray crystallography-based model. We also note that OGT exhibits considerable heterogeneity in tetratricopeptide repeat units N-terminal to the dimer interface with repercussions for how OGT binds protein ligands and partners.
(© 2021. The Author(s).)
References: J Proteome Res. 2021 Feb 5;20(2):1229-1242. (PMID: 33356293)
J Comput Chem. 2004 Oct;25(13):1605-12. (PMID: 15264254)
J Struct Biol. 2015 Nov;192(2):216-21. (PMID: 26278980)
Open Biol. 2017 Jun;7(6):. (PMID: 28659383)
J Am Chem Soc. 2018 Mar 14;140(10):3510-3513. (PMID: 29485866)
Cell Chem Biol. 2018 May 17;25(5):513-518.e4. (PMID: 29606577)
J Biol Chem. 1986 Jun 15;261(17):8049-57. (PMID: 3086323)
Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. (PMID: 31588918)
Elife. 2018 Nov 09;7:. (PMID: 30412051)
Nat Chem Biol. 2012 Dec;8(12):969-74. (PMID: 23103942)
J Biol Chem. 2018 Jul 6;293(27):10810-10824. (PMID: 29769320)
Nat Methods. 2017 Apr;14(4):331-332. (PMID: 28250466)
Nat Chem Biol. 2012 Dec;8(12):966-8. (PMID: 23103939)
J Biol Chem. 2017 May 26;292(21):8948-8963. (PMID: 28302723)
EMBO J. 2012 Mar 21;31(6):1394-404. (PMID: 22307082)
Nat Chem Biol. 2017 Dec;13(12):1267-1273. (PMID: 29058723)
Bioconjug Chem. 2018 Jun 20;29(6):1834-1840. (PMID: 29723473)
Nat Struct Mol Biol. 2004 Oct;11(10):1001-7. (PMID: 15361863)
Nature. 2013 Jan 24;493(7433):561-4. (PMID: 23222540)
Structure. 2008 Feb;16(2):295-307. (PMID: 18275820)
Angew Chem Int Ed Engl. 2020 Jun 8;59(24):9601-9609. (PMID: 32092778)
Mol Biol Cell. 2010 Jun 15;21(12):1922-36. (PMID: 20410138)
Mol Cell. 2014 Jun 5;54(5):820-31. (PMID: 24857547)
Elife. 2015 Dec 01;4:. (PMID: 26623517)
Nat Struct Mol Biol. 2015 Sep;22(9):744-750. (PMID: 26237509)
Biochemistry. 2021 Mar 23;60(11):847-853. (PMID: 33709700)
J Mol Biol. 2003 Oct 31;333(4):721-45. (PMID: 14568533)
Nature. 2011 Jan 27;469(7331):564-7. (PMID: 21240259)
Mol Cell Biol. 2010 Nov;30(21):5071-85. (PMID: 20805357)
J Biol Chem. 1992 May 5;267(13):9005-13. (PMID: 1533623)
Mol Biol Cell. 2008 Oct;19(10):4130-40. (PMID: 18653473)
Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13427-32. (PMID: 19666537)
J Am Chem Soc. 2019 Aug 21;141(33):12974-12978. (PMID: 31373491)
Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501. (PMID: 20383002)
Annu Rev Genomics Hum Genet. 2010;11:161-87. (PMID: 20822471)
Science. 2013 Dec 6;342(6163):1235-9. (PMID: 24311690)
Annu Rev Biochem. 2011;80:825-58. (PMID: 21391816)
معلومات مُعتمدة: United Kingdom WT_ Wellcome Trust; MR/T040742/1 United Kingdom MRC_ Medical Research Council; United Kingdom BB_ Biotechnology and Biological Sciences Research Council
المشرفين على المادة: 0 (Amino Acids)
0 (Nicotinic Acids)
0 (glucose tolerance factor)
0R0008Q3JB (Chromium)
تواريخ الأحداث: Date Created: 20211112 Date Completed: 20211224 Latest Revision: 20240508
رمز التحديث: 20240508
مُعرف محوري في PubMed: PMC8586251
DOI: 10.1038/s41467-021-26796-6
PMID: 34764280
قاعدة البيانات: MEDLINE
الوصف
تدمد:2041-1723
DOI:10.1038/s41467-021-26796-6