دورية أكاديمية

Chimeric RNA: DNA TracrRNA Improves Homology-Directed Repair In Vitro and In Vivo .

التفاصيل البيبلوغرافية
العنوان: Chimeric RNA: DNA TracrRNA Improves Homology-Directed Repair In Vitro and In Vivo .
المؤلفون: Simone BW; Department of Biochemistry and Molecular Biology, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Lee HB; Department of Biochemistry and Molecular Biology, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Daby CL; Department of Biochemistry and Molecular Biology, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Ata H; Department of Clinical and Translational Sciences, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Restrepo-Castillo S; Mayo Clinic Graduate School of Biomedical Sciences, Virology and Gene Therapy Track, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Martínez-Gálvez G; Mayo Clinic Graduate School of Biomedical Sciences, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Kar B; Department of Biochemistry and Molecular Biology, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Gendron WAC; Mayo Clinic Graduate School of Biomedical Sciences, Virology and Gene Therapy Track, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Clark KJ; Department of Biochemistry and Molecular Biology, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA., Ekker SC; Department of Biochemistry and Molecular Biology, Biomedical Engineering and Physiology Track, Mayo Clinic, Rochester, Minnesota, USA.
المصدر: The CRISPR journal [CRISPR J] 2022 Feb; Vol. 5 (1), pp. 40-52. Date of Electronic Publication: 2021 Dec 17.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 101738191 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2573-1602 (Electronic) Linking ISSN: 25731599 NLM ISO Abbreviation: CRISPR J Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [New Rochelle, NY] : Mary Ann Liebert, Inc., [2018]-
مواضيع طبية MeSH: CRISPR-Cas Systems*/genetics , Gene Editing*, DNA ; DNA Breaks, Double-Stranded ; Humans ; RNA/genetics
مستخلص: Nearly 90% of human pathogenic mutations are caused by small genetic variations, and methods to correct these errors efficiently are critically important. One way to make small DNA changes is providing a single-stranded oligo deoxynucleotide (ssODN) containing an alteration coupled with a targeted double-strand break (DSB) at the target locus in the genome. Coupling an ssODN donor with a CRISPR-Cas9-mediated DSB is one of the most streamlined approaches to introduce small changes. However, in many systems, this approach is inefficient and introduces imprecise repair at the genetic junctions. We herein report a technology that uses spatiotemporal localization of an ssODN with CRISPR-Cas9 to improve gene alteration. We show that by fusing an ssODN template to the trans-activating RNA (tracrRNA), we recover precise genetic alterations, with increased integration and precision in vitro and in vivo . Finally, we show that this technology can be used to enhance gene conversion with other gene editing tools such as transcription activator like effector nucleases.
References: Genetics. 2013 Aug;194(4):1029-35. (PMID: 23709638)
Elife. 2018 May 29;7:. (PMID: 29809142)
Methods Cell Biol. 1999;59:117-26. (PMID: 9891358)
CRISPR J. 2022 Feb;5(1):123-130. (PMID: 35119294)
Mol Ther. 2016 Apr;24(4):678-84. (PMID: 26867951)
Proc Natl Acad Sci U S A. 2013 Aug 20;110(34):13904-9. (PMID: 23918387)
Genes Brain Behav. 2014 Jun;13(5):478-87. (PMID: 24679220)
Science. 2014 Nov 28;346(6213):1258096. (PMID: 25430774)
Nat Protoc. 2013 Nov;8(11):2281-2308. (PMID: 24157548)
PLoS One. 2013 May 29;8(5):e65259. (PMID: 23734242)
PLoS Genet. 2018 Sep 12;14(9):e1007652. (PMID: 30208061)
Cell Rep. 2016 Mar 8;14(9):2263-2272. (PMID: 26923600)
DNA Repair (Amst). 2008 Oct 1;7(10):1765-71. (PMID: 18675941)
Nat Rev Dis Primers. 2018 Mar 15;4:18010. (PMID: 29542687)
Nucleic Acids Res. 2014 Dec 16;42(22):e168. (PMID: 25300484)
Nat Methods. 2011 Jul 17;8(9):753-5. (PMID: 21765410)
Nature. 2012 Nov 1;491(7422):114-8. (PMID: 23000899)
Trends Genet. 2016 Dec;32(12):815-827. (PMID: 27836208)
Dis Model Mech. 2018 Oct 18;11(10):. (PMID: 30355591)
Biochim Biophys Acta. 2016 Sep;1863(9):2333-44. (PMID: 27350235)
Science. 2020 Apr 17;368(6488):290-296. (PMID: 32217751)
Bioinformatics. 2017 Jan 15;33(2):286-288. (PMID: 27559154)
Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):E10745-E10754. (PMID: 29183983)
Dev Cell. 2016 Mar 21;36(6):654-67. (PMID: 27003937)
Nucleic Acids Res. 2013 Nov;41(21):9779-85. (PMID: 23980031)
Commun Biol. 2018 May 31;1:54. (PMID: 30271937)
Sci Transl Med. 2016 Oct 12;8(360):360ra134. (PMID: 27733558)
Nature. 2019 Dec;576(7785):149-157. (PMID: 31634902)
Hum Gene Ther. 2016 Jun;27(6):451-63. (PMID: 26854857)
Nucleic Acids Res. 2010 Aug;38(15):e152. (PMID: 20530528)
Mol Ther Nucleic Acids. 2016 Jul 12;5(7):e334. (PMID: 27404719)
Nature. 2017 Nov 23;551(7681):464-471. (PMID: 29160308)
Genes Brain Behav. 2019 Feb;18(2):e12549. (PMID: 30588759)
Sci Rep. 2019 Mar 18;9(1):4811. (PMID: 30886178)
Nat Biotechnol. 2016 Mar;34(3):339-44. (PMID: 26789497)
Sci Rep. 2014 Jan 10;4:3632. (PMID: 24407151)
Nature. 2016 Apr 20;533(7603):420-4. (PMID: 27096365)
Biomed J. 2020 Feb;43(1):8-17. (PMID: 32200959)
Acta Naturae. 2014 Jul;6(3):19-40. (PMID: 25349712)
Nat Genet. 2018 Aug;50(8):1132-1139. (PMID: 30054595)
Nature. 2018 Jul;559(7714):405-409. (PMID: 29995861)
Nat Methods. 2014 Jul;11(7):705-6. (PMID: 24972169)
Science. 2012 Aug 17;337(6096):816-21. (PMID: 22745249)
Science. 2013 Feb 15;339(6121):819-23. (PMID: 23287718)
J Biotechnol. 2017 Jan 10;241:136-146. (PMID: 27845164)
معلومات مُعتمدة: R01 GM134732 United States GM NIGMS NIH HHS
المشرفين على المادة: 63231-63-0 (RNA)
9007-49-2 (DNA)
تواريخ الأحداث: Date Created: 20211222 Date Completed: 20220404 Latest Revision: 20230116
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC8892967
DOI: 10.1089/crispr.2021.0087
PMID: 34935462
قاعدة البيانات: MEDLINE
الوصف
تدمد:2573-1602
DOI:10.1089/crispr.2021.0087