دورية أكاديمية
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Temporal Gene Expression in Apical Culms Shows Early Changes in Cell Wall Biosynthesis Genes in Sugarcane.

التفاصيل البيبلوغرافية
العنوان: Temporal Gene Expression in Apical Culms Shows Early Changes in Cell Wall Biosynthesis Genes in Sugarcane.
المؤلفون: Hosaka GK; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo (USP), Piracicaba, Brazil., Correr FH; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo (USP), Piracicaba, Brazil., da Silva CC; Center for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas (UNICAMP), Campinas, Brazil., Sforça DA; Center for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas (UNICAMP), Campinas, Brazil., Barreto FZ; Plant Biotechnology Laboratory, Centre for Agricultural Sciences, Federal University of São Carlos (CCA-UFSCar), Araras, Brazil., Balsalobre TWA; Plant Biotechnology Laboratory, Centre for Agricultural Sciences, Federal University of São Carlos (CCA-UFSCar), Araras, Brazil., Pasha A; Department of Cell and Systems Biology, Centre for the Analysis of the Genome Evolution and Function, University of Toronto, Toronto, ON, Canada., de Souza AP; Center for Molecular Biology and Genetic Engineering (CBMEG), University of Campinas (UNICAMP), Campinas, Brazil., Provart NJ; Department of Cell and Systems Biology, Centre for the Analysis of the Genome Evolution and Function, University of Toronto, Toronto, ON, Canada., Carneiro MS; Plant Biotechnology Laboratory, Centre for Agricultural Sciences, Federal University of São Carlos (CCA-UFSCar), Araras, Brazil., Margarido GRA; Luiz de Queiroz College of Agriculture (ESALQ), University of São Paulo (USP), Piracicaba, Brazil.
المصدر: Frontiers in plant science [Front Plant Sci] 2021 Dec 13; Vol. 12, pp. 736797. Date of Electronic Publication: 2021 Dec 13 (Print Publication: 2021).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101568200 Publication Model: eCollection Cited Medium: Print ISSN: 1664-462X (Print) Linking ISSN: 1664462X NLM ISO Abbreviation: Front Plant Sci Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Lausanne : Frontiers Research Foundation, 2010-
مستخلص: Multiple genes in sugarcane control sucrose accumulation and the biosynthesis of cell wall components; however, it is unclear how these genes are expressed in its apical culms. To better understand this process, we sequenced mRNA from +1 stem internodes collected from four genotypes with different concentrations of soluble solids. Culms were collected at four different time points, ranging from six to 12-month-old plants. Here we show differentially expressed genes related to sucrose metabolism and cell wall biosynthesis, including genes encoding invertases, sucrose synthase and cellulose synthase. Our results showed increased expression of invertases in IN84-58, the genotype with lower sugar and higher fiber content, as well as delayed expression of secondary cell wall-related cellulose synthase for the other genotypes. Interestingly, genes involved with hormone metabolism were differentially expressed across time points in the three genotypes with higher soluble solids content. A similar result was observed for genes controlling maturation and transition to reproductive stages, possibly a result of selection against flowering in sugarcane breeding programs. These results indicate that carbon partitioning in apical culms of contrasting genotypes is mainly associated with differential cell wall biosynthesis, and may include early modifications for subsequent sucrose accumulation. Co-expression network analysis identified transcription factors related to growth and development, showing a probable time shift for carbon partitioning occurred in 10-month-old plants.
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
(Copyright © 2021 Hosaka, Correr, da Silva, Sforça, Barreto, Balsalobre, Pasha, de Souza, Provart, Carneiro and Margarido.)
References: Plant Mol Biol. 2009 Mar;69(4):473-88. (PMID: 19083153)
Front Plant Sci. 2013 Jul 24;4:272. (PMID: 23898339)
PLoS One. 2019 Jul 18;14(7):e0219843. (PMID: 31318931)
PLoS One. 2016 Feb 05;11(2):e0148572. (PMID: 26849212)
Plant Cell. 2017 Aug;29(8):1806-1821. (PMID: 28808136)
Plant Biotechnol J. 2010 Apr;8(3):263-76. (PMID: 20388126)
Plant Physiol Biochem. 2019 Nov;144:455-465. (PMID: 31655344)
Plant Physiol. 2004 Jun;135(2):969-77. (PMID: 15181208)
Bioinformation. 2013 May 25;9(9):464-5. (PMID: 23847400)
Nat Genet. 2018 Nov;50(11):1565-1573. (PMID: 30297971)
Mol Plant. 2019 Jun 3;12(6):879-892. (PMID: 30639314)
Plant Mol Biol. 2015 Dec;89(6):607-28. (PMID: 26456093)
Bioinformatics. 2014 Apr 1;30(7):923-30. (PMID: 24227677)
J Integr Plant Biol. 2016 Jan;58(1):91-103. (PMID: 25989254)
BMC Syst Biol. 2014;8 Suppl 4:S11. (PMID: 25521941)
Curr Opin Plant Biol. 2007 Oct;10(5):453-60. (PMID: 17900969)
Sci Rep. 2017 Mar 07;7:43364. (PMID: 28266527)
Plant Cell Physiol. 2004 Mar;45(3):281-9. (PMID: 15047876)
Cell Stress Chaperones. 2001 Jul;6(3):177-89. (PMID: 11599559)
Plant Cell Rep. 2020 Jul;39(7):873-889. (PMID: 32314046)
Plant Physiol. 2008 Feb;146(2):623-35. (PMID: 18162593)
Nat Biotechnol. 2011 May 15;29(7):644-52. (PMID: 21572440)
Plant Physiol. 1991;96:794-801. (PMID: 11538006)
J Biol Chem. 2000 Jan 21;275(3):1723-30. (PMID: 10636868)
Plant Physiol. 2015 Sep;169(1):85-95. (PMID: 26246449)
Plant J. 2020 Sep;103(6):2039-2051. (PMID: 32537783)
J Biol Chem. 2001 Apr 27;276(17):14139-52. (PMID: 11133985)
J Integr Plant Biol. 2014 Apr;56(4):400-10. (PMID: 24289830)
Sci Rep. 2018 Aug 2;8(1):11612. (PMID: 30072760)
Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):15898-903. (PMID: 12456878)
Science. 2001 Mar 23;291(5512):2405-7. (PMID: 11264535)
Plant Physiol. 2009 Jan;149(1):171-80. (PMID: 18987217)
Nature. 1994 Jun 23;369(6482):661-4. (PMID: 8208293)
Mol Plant. 2016 Apr 4;9(4):541-57. (PMID: 26714049)
PLoS One. 2013 Apr 17;8(4):e61505. (PMID: 23613865)
Nat Cell Biol. 2011 May;13(5):616-22. (PMID: 21499259)
Funct Integr Genomics. 2007 Apr;7(2):153-67. (PMID: 17111183)
Plant Signal Behav. 2010 Dec;5(12):1571-4. (PMID: 21150290)
Plant Biol (Stuttg). 2011 Mar;13(2):325-32. (PMID: 21309979)
Plant J. 2004 Mar;37(6):914-39. (PMID: 14996223)
Plant Physiol. 1994 Feb;104(2):551-556. (PMID: 12232105)
Nat Commun. 2018 Jul 6;9(1):2638. (PMID: 29980662)
Plant J. 2002 Jan;29(2):225-35. (PMID: 11851922)
Genome Biol. 2010;11(2):R14. (PMID: 20132535)
Cytogenet Genome Res. 2005;109(1-3):27-33. (PMID: 15753555)
Plant Cell Environ. 2009 Dec;32(12):1633-51. (PMID: 19712066)
Physiol Plant. 2002 Sep;116(1):12-19. (PMID: 12207657)
Plant Mol Biol. 1997 Jun;34(3):403-15. (PMID: 9225852)
J Exp Bot. 2006;57(3):449-59. (PMID: 16397003)
BMC Genomics. 2020 Sep 29;21(1):673. (PMID: 32993494)
Bioinformatics. 2015 Oct 1;31(19):3210-2. (PMID: 26059717)
Plant Physiol. 1989 Apr;89(4):1117-21. (PMID: 16666673)
Plant Physiol. 1997 Dec;115(4):1651-1659. (PMID: 12223886)
Dev Cell. 2011 Dec 13;21(6):1144-55. (PMID: 22172675)
Plant Physiol. 2011 Sep;157(1):160-74. (PMID: 21753116)
Plant J. 2001 Nov;28(3):271-82. (PMID: 11722770)
Genome Res. 2003 Nov;13(11):2498-504. (PMID: 14597658)
F1000Res. 2015 Dec 30;4:1521. (PMID: 26925227)
Plant Mol Biol. 2002 Jun-Jul;49(3-4):373-85. (PMID: 12036261)
EMBO J. 1997 Feb 17;16(4):726-38. (PMID: 9049302)
Bioinformatics. 2010 Jan 1;26(1):139-40. (PMID: 19910308)
BMC Plant Biol. 2021 Jan 7;21(1):23. (PMID: 33413115)
Plant Physiol. 2010 Jan;152(1):320-31. (PMID: 19897604)
Genomics Inform. 2014 Sep;12(3):87-97. (PMID: 25317107)
PLoS One. 2015 Aug 04;10(8):e0134909. (PMID: 26241317)
DNA Res. 2013 Oct;20(5):511-24. (PMID: 23810914)
Genome Biol. 2004;5(11):245. (PMID: 15535871)
BMC Genomics. 2017 Nov 25;18(1):909. (PMID: 29178834)
Plant Physiol. 1997 Jul;114(3):817-825. (PMID: 12223744)
Plant J. 2010 Aug;63(3):469-83. (PMID: 20497379)
Plant Cell. 2005 Jul;17(7):2059-76. (PMID: 15937231)
Bioinformatics. 2005 Sep 15;21(18):3674-6. (PMID: 16081474)
Planta. 2005 Mar;220(5):678-88. (PMID: 15452707)
BMC Genomics. 2009 Mar 21;10:120. (PMID: 19302712)
Hortic Res. 2019 Jul 11;6:85. (PMID: 31645946)
Plant Cell. 2007 Mar;19(3):890-903. (PMID: 17351116)
Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):1450-5. (PMID: 12538856)
Plant Mol Biol. 2008 Apr;66(6):675-83. (PMID: 18236009)
PLoS One. 2014 Sep 15;9(9):e107351. (PMID: 25222706)
BMC Plant Biol. 2015 Dec 29;15:300. (PMID: 26714767)
BMC Bioinformatics. 2008 Dec 29;9:559. (PMID: 19114008)
Physiol Plant. 2009 Jun;136(2):237-49. (PMID: 19453502)
PLoS One. 2020 May 22;15(5):e0233211. (PMID: 32442233)
Front Plant Sci. 2013 May 30;4:163. (PMID: 23755057)
Nat Methods. 2015 Apr;12(4):357-60. (PMID: 25751142)
Nucleic Acids Res. 2012 Jan;40(Database issue):D1178-86. (PMID: 22110026)
Plant Signal Behav. 2007 Sep;2(5):424-5. (PMID: 19704621)
BMC Plant Biol. 2018 Nov 7;18(1):270. (PMID: 30404601)
J Exp Bot. 2011 May;62(8):2465-83. (PMID: 21278228)
J Exp Bot. 2012 Aug;63(13):4647-70. (PMID: 22732107)
Nat Methods. 2017 Apr;14(4):417-419. (PMID: 28263959)
J Mol Biol. 1990 Oct 5;215(3):403-10. (PMID: 2231712)
Plant Physiol. 1997 Oct;115(2):609-616. (PMID: 12223829)
BMC Plant Biol. 2013 Oct 28;13:169. (PMID: 24164720)
Proc Natl Acad Sci U S A. 1999 Dec 21;96(26):15348-53. (PMID: 10611387)
Nucleic Acids Res. 2017 Jan 4;45(D1):D1040-D1045. (PMID: 27924042)
Plant J. 2010 Aug;63(3):499-511. (PMID: 20497377)
Genetica. 2002 May;115(1):49-63. (PMID: 12188048)
Plant Biol (Stuttg). 2009 Jan;11(1):90-6. (PMID: 19121118)
فهرسة مساهمة: Keywords: RNA-seq; Saccharum; co-expression network; gene expression; soluble solids
تواريخ الأحداث: Date Created: 20211230 Latest Revision: 20230921
رمز التحديث: 20230921
مُعرف محوري في PubMed: PMC8710541
DOI: 10.3389/fpls.2021.736797
PMID: 34966397
قاعدة البيانات: MEDLINE
الوصف
تدمد:1664-462X
DOI:10.3389/fpls.2021.736797