دورية أكاديمية
أعرض في EDS

Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa.

التفاصيل البيبلوغرافية
العنوان: Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa.
المؤلفون: Ye Z; Center for Mechanisms of Evolution, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA., Zhao C; Center for Mechanisms of Evolution, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA., Raborn RT; Center for Mechanisms of Evolution, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA., Lin M; Center for Mechanisms of Evolution, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA., Wei W; Center for Mechanisms of Evolution, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA., Hao Y; Center for Mechanisms of Evolution, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA., Lynch M; Center for Mechanisms of Evolution, Biodesign Institute, Arizona State University, Tempe, AZ 85287, USA.
المصدر: Molecular biology and evolution [Mol Biol Evol] 2022 Apr 11; Vol. 39 (4).
نوع المنشور: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: United States NLM ID: 8501455 Publication Model: Print Cited Medium: Internet ISSN: 1537-1719 (Electronic) Linking ISSN: 07374038 NLM ISO Abbreviation: Mol Biol Evol Subsets: MEDLINE
أسماء مطبوعة: Publication: 2003- : New York, NY : Oxford University Press
Original Publication: [Chicago, Ill.] : University of Chicago Press, [c1983-
مواضيع طبية MeSH: Genome, Mitochondrial* , Pulicaria*/genetics, Animals ; DNA, Mitochondrial/genetics ; Daphnia/genetics ; Heteroplasmy ; Recombination, Genetic
مستخلص: Genetic variants of mitochondrial DNA at the individual (heteroplasmy) and population (polymorphism) levels provide insight into their roles in multiple cellular and evolutionary processes. However, owing to the paucity of genome-wide data at the within-individual and population levels, the broad patterns of these two forms of variation remain poorly understood. Here, we analyze 1,804 complete mitochondrial genome sequences from Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa. Extensive heteroplasmy is observed in D. obtusa, where the high level of intraclonal divergence must have resulted from a biparental-inheritance event, and recombination in the mitochondrial genome is apparent, although perhaps not widespread. Global samples of D. pulex reveal remarkably low mitochondrial effective population sizes, <3% of those for the nuclear genome. In addition, levels of population diversity in mitochondrial and nuclear genomes are uncorrelated across populations, suggesting an idiosyncratic evolutionary history of mitochondria in D. pulex. These population-genetic features appear to be a consequence of background selection associated with highly deleterious mutations arising in the strongly linked mitochondrial genome, which is consistent with polymorphism and divergence data suggesting a predominance of strong purifying selection. Nonetheless, the fixation of mildly deleterious mutations in the mitochondrial genome also appears to be driving positive selection on genes encoded in the nuclear genome whose products are deployed in the mitochondrion.
(© The Author(s) 2022. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution.)
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معلومات مُعتمدة: R35 GM122566 United States GM NIGMS NIH HHS
فهرسة مساهمة: Keywords: Daphnia; heteroplasmy; hybridization; mitochondria; nucleotide diversity; purifying selection
المشرفين على المادة: 0 (DNA, Mitochondrial)
تواريخ الأحداث: Date Created: 20220324 Date Completed: 20220414 Latest Revision: 20220613
رمز التحديث: 20221213
مُعرف محوري في PubMed: PMC9004417
DOI: 10.1093/molbev/msac059
PMID: 35325186
قاعدة البيانات: MEDLINE
الوصف
تدمد:1537-1719
DOI:10.1093/molbev/msac059