دورية أكاديمية

Increasing cell size remodels the proteome and promotes senescence.

التفاصيل البيبلوغرافية
العنوان: Increasing cell size remodels the proteome and promotes senescence.
المؤلفون: Lanz MC; Department of Biology, Stanford University, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, Stanford, CA 94305, USA., Zatulovskiy E; Department of Biology, Stanford University, Stanford, CA 94305, USA. Electronic address: evgeny@stanford.edu., Swaffer MP; Department of Biology, Stanford University, Stanford, CA 94305, USA., Zhang L; Chan Zuckerberg Biohub, Stanford, CA 94305, USA., Ilerten I; Department of Biology, Stanford University, Stanford, CA 94305, USA., Zhang S; Department of Biology, Stanford University, Stanford, CA 94305, USA., You DS; Department of Biology, Stanford University, Stanford, CA 94305, USA., Marinov G; Department of Genetics, Stanford University, Stanford, CA 94305, USA., McAlpine P; Chan Zuckerberg Biohub, Stanford, CA 94305, USA., Elias JE; Chan Zuckerberg Biohub, Stanford, CA 94305, USA., Skotheim JM; Department of Biology, Stanford University, Stanford, CA 94305, USA. Electronic address: skotheim@stanford.edu.
المصدر: Molecular cell [Mol Cell] 2022 Sep 01; Vol. 82 (17), pp. 3255-3269.e8. Date of Electronic Publication: 2022 Aug 19.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE
أسماء مطبوعة: Publication: Cambridge Ma : Cell Press
Original Publication: Cambridge, Mass. : Cell Press, c1997-
مواضيع طبية MeSH: Cellular Senescence*/physiology , Proteome*/genetics, Cell Size ; DNA Damage
مستخلص: Cell size is tightly controlled in healthy tissues, but it is unclear how deviations in cell size affect cell physiology. To address this, we measured how the cell's proteome changes with increasing cell size. Size-dependent protein concentration changes are widespread and predicted by subcellular localization, size-dependent mRNA concentrations, and protein turnover. As proliferating cells grow larger, concentration changes typically associated with cellular senescence are increasingly pronounced, suggesting that large size may be a cause rather than just a consequence of cell senescence. Consistent with this hypothesis, larger cells are prone to replicative, DNA-damage-induced, and CDK4/6i-induced senescence. Size-dependent changes to the proteome, including those associated with senescence, are not observed when an increase in cell size is accompanied by an increase in ploidy. Together, our findings show how cell size could impact many aspects of cell physiology by remodeling the proteome and provide a rationale for cell size control and polyploidization.
Competing Interests: Declaration of interests The authors declare no competing interests.
(Copyright © 2022 Elsevier Inc. All rights reserved.)
References: Mol Cell. 2018 Jan 18;69(2):253-264.e5. (PMID: 29351845)
Organogenesis. 2010 Apr-Jun;6(2):88-96. (PMID: 20885855)
Dev Cell. 2021 Jun 21;56(12):1756-1769.e7. (PMID: 34022133)
Genes Dev. 2009 Nov 1;23(21):2461-77. (PMID: 19884253)
Nat Biotechnol. 2008 Dec;26(12):1367-72. (PMID: 19029910)
Mol Cell Proteomics. 2018 May;17(5):974-992. (PMID: 29414762)
J Cell Biol. 1973 Dec;59(3):766-71. (PMID: 4128323)
Curr Genet. 2019 Dec;65(6):1281-1285. (PMID: 31147736)
Exp Cell Res. 1961 Jun;24:151-3. (PMID: 13785539)
PLoS One. 2011 Jan 20;6(1):e16053. (PMID: 21283800)
Nat Methods. 2007 Mar;4(3):207-14. (PMID: 17327847)
Science. 2015 May 15;348(6236):1245075. (PMID: 25977557)
Nat Rev Cancer. 2015 Jul;15(7):397-408. (PMID: 26105537)
Science. 2021 Jun 11;372(6547):1176-1181. (PMID: 34112688)
Genome Biol. 2009;10(3):R25. (PMID: 19261174)
Curr Protoc Protein Sci. 2019 Feb;95(1):e74. (PMID: 30238645)
Science. 2018 Dec 21;362(6421):1416-1422. (PMID: 30573629)
Trends Cell Biol. 2018 Jun;28(6):436-453. (PMID: 29477613)
Curr Biol. 2010 Nov 23;20(22):2010-5. (PMID: 20970341)
Cell. 2008 Feb 8;132(3):487-98. (PMID: 18267078)
Mol Cell. 2015 Apr 16;58(2):339-52. (PMID: 25866248)
Mol Cell. 2021 Dec 2;81(23):4861-4875.e7. (PMID: 34731644)
Science. 2020 Jul 24;369(6502):466-471. (PMID: 32703881)
Cell Cycle. 2008 Nov 1;7(21):3355-61. (PMID: 18948731)
Mol Biol Cell. 2015 Feb 15;26(4):797-804. (PMID: 25518937)
Nat Commun. 2018 Oct 29;9(1):4496. (PMID: 30374016)
Mol Syst Biol. 2012 Feb 28;8:572. (PMID: 22373820)
Cell Syst. 2022 Jun 15;13(6):454-470.e15. (PMID: 35613616)
Trends Genet. 2020 May;36(5):360-372. (PMID: 32294416)
EMBO J. 2022 Mar 15;41(6):e108599. (PMID: 35037284)
J Proteome Res. 2011 Apr 1;10(4):1794-805. (PMID: 21254760)
Nucleic Acids Res. 2019 Jan 8;47(D1):D506-D515. (PMID: 30395287)
Curr Biol. 2020 Apr 6;30(7):1217-1230.e7. (PMID: 32059768)
J Cell Biol. 2015 Nov 23;211(4):757-63. (PMID: 26598613)
Mol Cell Proteomics. 2014 Dec;13(12):3497-506. (PMID: 25225357)
Sci Adv. 2021 Nov 12;7(46):eabk0271. (PMID: 34767451)
Curr Biol. 2017 May 22;27(10):1491-1497.e4. (PMID: 28479325)
Genes Dev. 2000 Dec 1;14(23):3051-64. (PMID: 11114893)
Nucleic Acids Res. 2020 Jan 8;48(D1):D682-D688. (PMID: 31691826)
BMC Bioinformatics. 2012;13 Suppl 16:S12. (PMID: 23176165)
Mol Biol Cell. 2019 Nov 15;30(24):2985-2995. (PMID: 31599704)
J Cell Biol. 2015 Nov 23;211(4):765-74. (PMID: 26598614)
Mol Cell Proteomics. 2019 Jul;18(7):1468-1478. (PMID: 30967486)
Cell. 2019 Feb 21;176(5):1083-1097.e18. (PMID: 30739799)
J Cell Biol. 2007 Nov 19;179(4):593-600. (PMID: 17998401)
Bioinformatics. 2013 Jan 1;29(1):15-21. (PMID: 23104886)
Nature. 2015 Oct 8;526(7572):268-72. (PMID: 26390151)
Proc Natl Acad Sci U S A. 2020 Jul 7;117(27):15659-15665. (PMID: 32581119)
Front Cell Dev Biol. 2021 Mar 29;9:645593. (PMID: 33855023)
Cell Cycle. 2009 Jun 15;8(12):1888-95. (PMID: 19471117)
Nat Commun. 2021 Jul 9;12(1):4202. (PMID: 34244507)
Nucleic Acids Res. 2019 Jan 8;47(D1):D766-D773. (PMID: 30357393)
Cell. 2013 Sep 12;154(6):1194-205. (PMID: 24034244)
Dev Cell. 2016 Nov 7;39(3):370-382. (PMID: 27720611)
Genes Dev. 2000 Dec 1;14(23):3037-50. (PMID: 11114892)
Mol Cell. 2020 Apr 16;78(2):359-370.e6. (PMID: 32246903)
Nat Methods. 2013 Jan;10(1):71-3. (PMID: 23160280)
Science. 2012 Nov 9;338(6108):822-4. (PMID: 23139336)
Annu Rev Cell Dev Biol. 2020 Oct 6;36:219-236. (PMID: 32603615)
معلومات مُعتمدة: F32 GM137522 United States GM NIGMS NIH HHS; R35 GM134858 United States GM NIGMS NIH HHS
فهرسة مساهمة: Keywords: DNA damage; SA-beta-Gal; cell cycle; cell size; p16(INK4); palbociclib; polyploidy; proteomics; senescence; size-scaling
المشرفين على المادة: 0 (Proteome)
تواريخ الأحداث: Date Created: 20220820 Date Completed: 20220908 Latest Revision: 20230902
رمز التحديث: 20230902
مُعرف محوري في PubMed: PMC9444988
DOI: 10.1016/j.molcel.2022.07.017
PMID: 35987199
قاعدة البيانات: MEDLINE