دورية أكاديمية
Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota.
| العنوان: | Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota. |
|---|---|
| المؤلفون: | Seymour CO; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA., Palmer M; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA., Becraft ED; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.; Department of Biology, University of North Alabama, Florence, AL, USA., Stepanauskas R; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA., Friel AD; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA., Schulz F; DOE Joint Genome Institute, Berkeley, CA, USA.; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Woyke T; DOE Joint Genome Institute, Berkeley, CA, USA.; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Eloe-Fadrosh E; DOE Joint Genome Institute, Berkeley, CA, USA.; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Lai D; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA., Jiao JY; State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, People's Republic of China., Hua ZS; Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei, People's Republic of China., Liu L; State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, People's Republic of China., Lian ZH; State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, People's Republic of China., Li WJ; State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, People's Republic of China.; State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, People's Republic of China., Chuvochina M; Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, Queensland, Australia., Finley BK; Center for Ecosystem Science and Society (ECOSS), Northern Arizona University, Flagstaff, AZ, USA.; Department of Ecology and Evolutionary Biology, University of California, Irvine, CA, USA., Koch BJ; Center for Ecosystem Science and Society (ECOSS), Northern Arizona University, Flagstaff, AZ, USA., Schwartz E; Center for Ecosystem Science and Society (ECOSS), Northern Arizona University, Flagstaff, AZ, USA., Dijkstra P; Center for Ecosystem Science and Society (ECOSS), Northern Arizona University, Flagstaff, AZ, USA., Moser DP; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA.; Division of Hydrologic Sciences, Desert Research Institute, Las Vegas, NV, USA., Hungate BA; Center for Ecosystem Science and Society (ECOSS), Northern Arizona University, Flagstaff, AZ, USA., Hedlund BP; School of Life Sciences, University of Nevada, Las Vegas, Las Vegas, NV, USA. brian.hedlund@unlv.edu.; Nevada Institute of Personalized Medicine, Las Vegas, NV, USA. brian.hedlund@unlv.edu. |
| المصدر: | Nature microbiology [Nat Microbiol] 2023 Apr; Vol. 8 (4), pp. 727-744. Date of Electronic Publication: 2023 Mar 16. |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S. |
| اللغة: | English |
| بيانات الدورية: | Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: [London] : Nature Publishing Group, [2016]- |
| مواضيع طبية MeSH: | Calcifying Nanoparticles*/metabolism , Microbiota*/genetics, Humans ; Bacteria/metabolism |
| مستخلص: | Candidate bacterial phylum Omnitrophota has not been isolated and is poorly understood. We analysed 72 newly sequenced and 349 existing Omnitrophota genomes representing 6 classes and 276 species, along with Earth Microbiome Project data to evaluate habitat, metabolic traits and lifestyles. We applied fluorescence-activated cell sorting and differential size filtration, and showed that most Omnitrophota are ultra-small (~0.2 μm) cells that are found in water, sediments and soils. Omnitrophota genomes in 6 classes are reduced, but maintain major biosynthetic and energy conservation pathways, including acetogenesis (with or without the Wood-Ljungdahl pathway) and diverse respirations. At least 64% of Omnitrophota genomes encode gene clusters typical of bacterial symbionts, suggesting host-associated lifestyles. We repurposed quantitative stable-isotope probing data from soils dominated by andesite, basalt or granite weathering and identified 3 families with high isotope uptake consistent with obligate bacterial predators. We propose that most Omnitrophota inhabit various ecosystems as predators or parasites. (© 2023. The Author(s).) |
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| معلومات مُعتمدة: | 1826734 National Science Foundation (NSF); 1928924 National Science Foundation (NSF); 1516679 National Science Foundation (NSF) |
| المشرفين على المادة: | 0 (Calcifying Nanoparticles) |
| تواريخ الأحداث: | Date Created: 20230317 Date Completed: 20230404 Latest Revision: 20230416 |
| رمز التحديث: | 20230417 |
| مُعرف محوري في PubMed: | PMC10066038 |
| DOI: | 10.1038/s41564-022-01319-1 |
| PMID: | 36928026 |
| قاعدة البيانات: | MEDLINE |
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