دورية أكاديمية
A collaborative approach to improving representation in viral genomic surveillance.
| العنوان: | A collaborative approach to improving representation in viral genomic surveillance. |
|---|---|
| المؤلفون: | Kim PY; Department of Biological Sciences, Grambling State University, Grambling, LA, United States of America., Kim AY; Department of Biological Sciences, Grambling State University, Grambling, LA, United States of America., Newman JJ; School of Biological Sciences, Louisiana Tech University, Ruston, LA, United States of America., Cella E; Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, United States of America., Bishop TC; Physics and Chemistry Programs, Louisiana Tech University, Ruston, LA, United States of America., Huwe PJ; Mercer University School of Medicine, Macon, GA, United States of America., Uchakina ON; Mercer University School of Medicine, Macon, GA, United States of America., McKallip RJ; Mercer University School of Medicine, Macon, GA, United States of America., Mack VL; Mercer Medicine, Macon, GA, United States of America., Hill MP; Mercer Medicine, Macon, GA, United States of America., Ogungbe IV; Department of Chemistry, Jackson State University, Jackson, MS, United States of America., Adeyinka O; Department of Chemistry, Jackson State University, Jackson, MS, United States of America., Jones S; Health Services Center, Jackson State University, Jackson, MS, United States of America., Ware G; Center of Excellence for Emerging Viral Threats, Louisiana State University Health Shreveport, Shreveport, LA, United States of America., Carroll J; Center of Excellence for Emerging Viral Threats, Louisiana State University Health Shreveport, Shreveport, LA, United States of America., Sawyer JF; Center of Excellence for Emerging Viral Threats, Louisiana State University Health Shreveport, Shreveport, LA, United States of America., Densmore KH; Center of Excellence for Emerging Viral Threats, Louisiana State University Health Shreveport, Shreveport, LA, United States of America., Foster M; School of Biological Sciences, Louisiana Tech University, Ruston, LA, United States of America., Valmond L; Department of Biological Sciences, Grambling State University, Grambling, LA, United States of America., Thomas J; Department of Biological Sciences, Grambling State University, Grambling, LA, United States of America., Azarian T; Burnett School of Biomedical Sciences, University of Central Florida, Orlando, FL, United States of America., Queen K; Center of Excellence for Emerging Viral Threats, Louisiana State University Health Shreveport, Shreveport, LA, United States of America., Kamil JP; Center of Excellence for Emerging Viral Threats, Louisiana State University Health Shreveport, Shreveport, LA, United States of America.; Department of Microbiology and Immunology, Louisiana State University Health Shreveport, Shreveport, LA, United States of America. |
| المصدر: | PLOS global public health [PLOS Glob Public Health] 2023 Jul 19; Vol. 3 (7), pp. e0001935. Date of Electronic Publication: 2023 Jul 19 (Print Publication: 2023). |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Public Library of Science Country of Publication: United States NLM ID: 9918283779606676 Publication Model: eCollection Cited Medium: Internet ISSN: 2767-3375 (Electronic) Linking ISSN: 27673375 NLM ISO Abbreviation: PLOS Glob Public Health Subsets: PubMed not MEDLINE |
| أسماء مطبوعة: | Original Publication: San Francisco, California : Public Library of Science, [2021]- |
| مستخلص: | The lack of routine viral genomic surveillance delayed the initial detection of SARS-CoV-2, allowing the virus to spread unfettered at the outset of the U.S. epidemic. Over subsequent months, poor surveillance enabled variants to emerge unnoticed. Against this backdrop, long-standing social and racial inequities have contributed to a greater burden of cases and deaths among minority groups. To begin to address these problems, we developed a new variant surveillance model geared toward building 'next generation' genome sequencing capacity at universities in or near rural areas and engaging the participation of their local communities. The resulting genomic surveillance network has generated more than 1,000 SARS-CoV-2 genomes to date, including the first confirmed case in northeast Louisiana of Omicron, and the first and sixth confirmed cases in Georgia of the emergent BA.2.75 and BQ.1.1 variants, respectively. In agreement with other studies, significantly higher viral gene copy numbers were observed in Delta variant samples compared to those from Omicron BA.1 variant infections, and lower copy numbers were seen in asymptomatic infections relative to symptomatic ones. Collectively, the results and outcomes from our collaborative work demonstrate that establishing genomic surveillance capacity at smaller academic institutions in rural areas and fostering relationships between academic teams and local health clinics represent a robust pathway to improve pandemic readiness. Competing Interests: The authors have declared that no competing interests exist. (Copyright: © 2023 Kim et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.) |
| التعليقات: | Update of: bioRxiv. 2022 Oct 20;:. (PMID: 36299431) |
| References: | Nat Med. 2022 Jul;28(7):1491-1500. (PMID: 35395151) Clin Infect Dis. 2023 Feb 8;76(3):e1277-e1284. (PMID: 36056896) Science. 2019 Jan 4;363(6422):74-77. (PMID: 30606844) Ann Epidemiol. 2021 Jul;59:16-20. (PMID: 33894385) N Engl J Med. 2023 Feb 16;388(7):662-664. (PMID: 36652339) Lancet. 2021 Jun 26;397(10293):2461-2462. (PMID: 34139198) medRxiv. 2022 Jul 21;:. (PMID: 35898347) Ann Intern Med. 2021 Mar;174(3):362-373. (PMID: 33253040) Nat Med. 2021 Aug;27(8):1370-1378. (PMID: 34108716) Nature. 2023 Feb;614(7948):521-529. (PMID: 36535326) Genome Med. 2022 Feb 16;14(1):15. (PMID: 35172877) Public Health. 2015 Jun;129(6):611-20. (PMID: 26025176) Appl Microbiol Biotechnol. 2021 Apr;105(8):3225-3234. (PMID: 33792750) Lancet Reg Health Am. 2022 Oct;14:. (PMID: 36380985) Nat Commun. 2022 Nov 16;13(1):7003. (PMID: 36385137) JAMA Intern Med. 2020 Nov 01;180(11):1447-1452. (PMID: 32780793) N Engl J Med. 2020 Feb 20;382(8):727-733. (PMID: 31978945) Bioinformatics. 2021 May 5;37(5):714-716. (PMID: 32814953) PLoS One. 2021 Oct 1;16(10):e0257521. (PMID: 34597327) PLoS One. 2021 Oct 29;16(10):e0259277. (PMID: 34714886) Nat Genet. 2022 Apr;54(4):499-507. (PMID: 35347305) Bioinformatics. 2014 Nov 15;30(22):3276-8. (PMID: 25095880) Lancet Infect Dis. 2022 Feb;22(2):183-195. (PMID: 34756186) Virus Evol. 2018 Jan 08;4(1):vex042. (PMID: 29340210) Genome Med. 2021 Feb 9;13(1):21. (PMID: 33563320) Science. 2021 Dec 17;374(6574):eabl9551. (PMID: 34726481) Biol Methods Protoc. 2020 Jul 18;5(1):bpaa014. (PMID: 33029559) Clin Chem. 2021 Dec 30;68(1):153-162. (PMID: 34633030) Cell Host Microbe. 2023 Jan 11;31(1):9-17.e3. (PMID: 36476380) Open Forum Infect Dis. 2022 Mar 17;9(5):ofac135. (PMID: 35479304) Lancet Infect Dis. 2022 Nov;22(11):1538-1540. (PMID: 36244347) Nature. 2022 Mar;603(7902):679-686. (PMID: 35042229) J Rural Health. 2021 Mar;37(2):272-277. (PMID: 33619806) Emerg Infect Dis. 2020 Oct;26(10):2497-2499. (PMID: 32497001) Nature. 2022 Feb;602(7898):671-675. (PMID: 35016199) Thorax. 2021 Jan;76(1):61-63. (PMID: 32963115) Nature. 2021 Aug 3;:. (PMID: 34345037) Int J Infect Dis. 2020 Jul;96:288-290. (PMID: 32437933) Sci Data. 2020 Jun 19;7(1):188. (PMID: 32561801) J Infect Dis. 2021 Nov 22;224(10):1658-1663. (PMID: 34255846) Science. 2018 Aug 31;361(6405):894-899. (PMID: 30139911) Nat Commun. 2023 Feb 14;14(1):824. (PMID: 36788246) Nature. 2022 Aug;608(7923):593-602. (PMID: 35714668) Virus Evol. 2020 Oct 05;6(2):veaa075. (PMID: 33318859) N Engl J Med. 2018 Feb 1;378(5):473-479. (PMID: 29385378) Clin Microbiol Infect. 2022 Apr;28(4):612.e1-612.e7. (PMID: 34826623) Nat Med. 2022 Sep;28(9):1785-1790. (PMID: 35760080) Nucleic Acids Res. 2021 Jan 8;49(D1):D121-D124. (PMID: 33166387) J Med Virol. 2022 Jan;94(1):327-334. (PMID: 34524690) Nat Protoc. 2017 Jun;12(6):1261-1276. (PMID: 28538739) Trends Microbiol. 2021 Nov;29(11):970-972. (PMID: 34535373) JAMA. 2021 Apr 13;325(14):1380-1382. (PMID: 33760030) bioRxiv. 2021 Mar 16;:. (PMID: 33758855) Int J Epidemiol. 2022 Jan 6;50(6):1795-1803. (PMID: 34999848) bioRxiv. 2020 Sep 04;:. (PMID: 32908977) Nature. 2021 Aug;596(7871):276-280. (PMID: 34237773) J Rural Health. 2021 Jan;37(1):224-226. (PMID: 32396220) Nat Commun. 2022 Nov 7;13(1):6706. (PMID: 36344489) J Gen Intern Med. 2020 Oct;35(10):3097-3099. (PMID: 32754782) BMC Res Notes. 2021 May 17;14(1):189. (PMID: 34001211) Mol Biol Evol. 2015 Jan;32(1):268-74. (PMID: 25371430) MMWR Morb Mortal Wkly Rep. 2021 Aug 06;70(31):1059-1062. (PMID: 34351882) Nat Med. 2022 Aug;28(8):1569-1572. (PMID: 35750157) Open Forum Infect Dis. 2022 Feb 20;9(5):ofac066. (PMID: 35392460) Nat Rev Microbiol. 2023 Jun;21(6):361-379. (PMID: 37020110) Nature. 2016 Feb 11;530(7589):228-232. (PMID: 26840485) Nature. 2022 Aug;608(7923):603-608. (PMID: 35790190) Virol Sin. 2021 Oct;36(5):901-912. (PMID: 33851337) Health Aff (Millwood). 2019 Dec;38(12):1993-2002. (PMID: 31794307) Proc Natl Acad Sci U S A. 2021 May 25;118(21):. (PMID: 33972412) Infect Dis Rep. 2021 Jul 16;13(3):645-653. (PMID: 34287354) Science. 2022 Oct 7;378(6615):eabq5358. (PMID: 36108049) Glob Chall. 2017 Jan 10;1(1):33-46. (PMID: 31565258) PLoS One. 2020 Sep 18;15(9):e0239403. (PMID: 32946527) Cell Rep. 2022 Jun 14;39(11):110969. (PMID: 35679864) J Rural Health. 2020 Jun;36(3):446-456. (PMID: 32543751) J Rural Health. 2020 Sep;36(4):602-608. (PMID: 32894612) J Infect. 2023 Jan;86(1):e24-e26. (PMID: 35995311) Nat Rev Microbiol. 2023 Mar;21(3):162-177. (PMID: 36653446) JMIR Public Health Surveill. 2022 Aug 5;8(8):e38551. (PMID: 35930345) Proc Natl Acad Sci U S A. 2021 Jan 5;118(1):. (PMID: 33328335) Cell. 2021 May 13;184(10):2595-2604.e13. (PMID: 33891875) JAMA. 2020 Jun 23;323(24):2466-2467. (PMID: 32391864) Lancet Infect Dis. 2022 Jan;22(1):35-42. (PMID: 34461056) Nature. 2020 Mar;579(7798):265-269. (PMID: 32015508) |
| معلومات مُعتمدة: | P20 GM121307 United States GM NIGMS NIH HHS; P20 GM134974 United States GM NIGMS NIH HHS |
| تواريخ الأحداث: | Date Created: 20230719 Latest Revision: 20231102 |
| رمز التحديث: | 20231215 |
| مُعرف محوري في PubMed: | PMC10355392 |
| DOI: | 10.1371/journal.pgph.0001935 |
| PMID: | 37467165 |
| قاعدة البيانات: | MEDLINE |
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