دورية أكاديمية
Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics.
العنوان: | Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics. |
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المؤلفون: | White MEH; Molecular Biology of Metabolism Laboratory, The Francis Crick Institute, London, UK., Sinn LR; Department of Biochemistry, Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany., Jones DM; Bioinformatics and Computational Biology Laboratory, The Francis Crick Institute, London, UK.; Department of Basic and Clinical Neuroscience, Maurice Wohl Clinical Neuroscience Institute, London, UK., de Folter J; Software Engineering and Artificial Intelligence Technology Platform, The Francis Crick Institute, London, UK., Aulakh SK; Molecular Biology of Metabolism Laboratory, The Francis Crick Institute, London, UK., Wang Z; Department of Biochemistry, Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany., Flynn HR; Mass Spectrometry Proteomics Science Technology Platform, The Francis Crick Institute, London, UK., Krüger L; Institute of Diagnostic Laboratory Medicine, Charité - Universitätsmedizin Berlin Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.; Department of Human Medicine, Medical School Berlin, Berlin, Germany., Tober-Lau P; Department of Infectious Diseases and Critical Care Medicine, Charité - Universitätsmedizin Berlin Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany., Demichev V; Molecular Biology of Metabolism Laboratory, The Francis Crick Institute, London, UK.; Department of Biochemistry, Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany., Kurth F; Department of Infectious Diseases and Critical Care Medicine, Charité - Universitätsmedizin Berlin Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany., Mülleder M; Core Facility High-throughput Mass Spectrometry, Charité - Universitätsmedizin Berlin Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany., Blanchard V; Institute of Diagnostic Laboratory Medicine, Charité - Universitätsmedizin Berlin Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany.; Department of Human Medicine, Medical School Berlin, Berlin, Germany., Messner CB; Molecular Biology of Metabolism Laboratory, The Francis Crick Institute, London, UK. christoph.messner@siaf.uzh.ch.; Precision Proteomic Center, Swiss Institute of Allergy and Asthma Research (SIAF), University of Zurich, Davos, Switzerland. christoph.messner@siaf.uzh.ch., Ralser M; Molecular Biology of Metabolism Laboratory, The Francis Crick Institute, London, UK. markus.ralser@charite.de.; Department of Biochemistry, Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany. markus.ralser@charite.de.; Max Planck Institute for Molecular Genetics, Berlin, Germany. markus.ralser@charite.de. |
المصدر: | Nature biomedical engineering [Nat Biomed Eng] 2024 Mar; Vol. 8 (3), pp. 233-247. Date of Electronic Publication: 2023 Jul 20. |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: Springer Nature Country of Publication: England NLM ID: 101696896 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2157-846X (Electronic) Linking ISSN: 2157846X NLM ISO Abbreviation: Nat Biomed Eng Subsets: MEDLINE |
أسماء مطبوعة: | Publication: London : Springer Nature Original Publication: [London] : Macmillan Publishers Limited, [2016]- |
مواضيع طبية MeSH: | Glycopeptides*/analysis , Glycopeptides*/chemistry , Glycopeptides*/metabolism , COVID-19*, Humans ; Mass Spectrometry ; Glycosylation ; Ions |
مستخلص: | Protein glycosylation, a complex and heterogeneous post-translational modification that is frequently dysregulated in disease, has been difficult to analyse at scale. Here we report a data-independent acquisition technique for the large-scale mass-spectrometric quantification of glycopeptides in plasma samples. The technique, which we named 'OxoScan-MS', identifies oxonium ions as glycopeptide fragments and exploits a sliding-quadrupole dimension to generate comprehensive and untargeted oxonium ion maps of precursor masses assigned to fragment ions from non-enriched plasma samples. By applying OxoScan-MS to quantify 1,002 glycopeptide features in the plasma glycoproteomes from patients with COVID-19 and healthy controls, we found that severe COVID-19 induces differential glycosylation in IgA, haptoglobin, transferrin and other disease-relevant plasma glycoproteins. OxoScan-MS may allow for the quantitative mapping of glycoproteomes at the scale of hundreds to thousands of samples. (© 2023. The Author(s).) |
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معلومات مُعتمدة: | United Kingdom WT_ Wellcome Trust; 200829/Z/16/Z United Kingdom WT_ Wellcome Trust; FC001134 United Kingdom ARC_ Arthritis Research UK; FC001134 United Kingdom WT_ Wellcome Trust |
المشرفين على المادة: | 0 (Glycopeptides) 0 (Ions) |
تواريخ الأحداث: | Date Created: 20230720 Date Completed: 20240327 Latest Revision: 20240328 |
رمز التحديث: | 20240329 |
مُعرف محوري في PubMed: | PMC10963274 |
DOI: | 10.1038/s41551-023-01067-5 |
PMID: | 37474612 |
قاعدة البيانات: | MEDLINE |
تدمد: | 2157-846X |
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DOI: | 10.1038/s41551-023-01067-5 |