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Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments.

التفاصيل البيبلوغرافية
العنوان: Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments.
المؤلفون: Baker BA; Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Gif-sur-Yvette, France., Gutiérrez-Preciado A; Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Gif-sur-Yvette, France., Rodríguez Del Río Á; Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA-CSIC), Madrid, Spain., McCarthy CGP; Institute for Comparative Genomics, Dalhousie University, Halifax, Nova Scotia, Canada.; Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada., López-García P; Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Gif-sur-Yvette, France., Huerta-Cepas J; Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA-CSIC), Madrid, Spain., Susko E; Institute for Comparative Genomics, Dalhousie University, Halifax, Nova Scotia, Canada.; Department of Mathematics and Statistics, Dalhousie University, Halifax, Nova Scotia, Canada., Roger AJ; Institute for Comparative Genomics, Dalhousie University, Halifax, Nova Scotia, Canada.; Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Nova Scotia, Canada., Eme L; Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Gif-sur-Yvette, France. laura.eme@universite-paris-saclay.fr., Moreira D; Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Gif-sur-Yvette, France. david.moreira@universite-paris-saclay.fr.
المصدر: Nature microbiology [Nat Microbiol] 2024 Apr; Vol. 9 (4), pp. 964-975. Date of Electronic Publication: 2024 Mar 22.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [London] : Nature Publishing Group, [2016]-
مواضيع طبية MeSH: Salinity* , Euryarchaeota*/genetics, Phylogeny ; Archaea/genetics ; Metagenome
مستخلص: Extremely halophilic archaea (Haloarchaea, Nanohaloarchaeota, Methanonatronarchaeia and Halarchaeoplasmatales) thrive in saturating salt concentrations where they must maintain osmotic equilibrium with their environment. The evolutionary history of adaptations enabling salt tolerance remains poorly understood, in particular because the phylogeny of several lineages is conflicting. Here we present a resolved phylogeny of extremely halophilic archaea obtained using improved taxon sampling and state-of-the-art phylogenetic approaches designed to cope with the strong compositional biases of their proteomes. We describe two uncultured lineages, Afararchaeaceae and Asbonarchaeaceae, which break the long branches at the base of Haloarchaea and Nanohaloarchaeota, respectively. We obtained 13 metagenome-assembled genomes (MAGs) of these archaea from metagenomes of hypersaline aquatic systems of the Danakil Depression (Ethiopia). Our phylogenomic analyses including these taxa show that at least four independent adaptations to extreme halophily occurred during archaeal evolution. Gene-tree/species-tree reconciliation suggests that gene duplication and horizontal gene transfer played an important role in this process, for example, by spreading key genes (such as those encoding potassium transporters) across extremely halophilic lineages.
(© 2024. The Author(s), under exclusive licence to Springer Nature Limited.)
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معلومات مُعتمدة: 787904 EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council); 803151 EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council)
تواريخ الأحداث: Date Created: 20240323 Date Completed: 20240408 Latest Revision: 20240425
رمز التحديث: 20240426
DOI: 10.1038/s41564-024-01647-4
PMID: 38519541
قاعدة البيانات: MEDLINE
الوصف
تدمد:2058-5276
DOI:10.1038/s41564-024-01647-4