دورية أكاديمية
أعرض في EDS

Low Diversity and High Genetic Structure for Platonia insignis Mart., an Endangered Fruit Tree Species.

التفاصيل البيبلوغرافية
العنوان: Low Diversity and High Genetic Structure for Platonia insignis Mart., an Endangered Fruit Tree Species.
المؤلفون: Garcia CB; Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil., Silva AVD; Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil., Carvalho IAS; Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil., Nascimento WFD; Science Center of Chapadinha, Federal University of Maranhão, Chapadinha 65500-000, MA, Brazil., Ramos SLF; Exact Sciences and Technology Institute, Federal University of Amazonas, Itacoatiara 69103-128, AM, Brazil., Rodrigues DP; Genetics Department, Federal University of Amazonas, Manaus 69067-005, AM, Brazil., Zucchi MI; São Paulo Agency for Agribusiness and Technology, Piracicaba 13400-970, SP, Brazil., Costa FM; Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil., Alves-Pereira A; Genetics Department, Federal University of Amazonas, Manaus 69067-005, AM, Brazil., Batista CEA; Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil., Amaral DD; Museu Paraense Emílio Goeldi, Belém 66040-170, PA, Brazil., Veasey EA; Genetics Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil.
المصدر: Plants (Basel, Switzerland) [Plants (Basel)] 2024 Apr 06; Vol. 13 (7). Date of Electronic Publication: 2024 Apr 06.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: MDPI AG Country of Publication: Switzerland NLM ID: 101596181 Publication Model: Electronic Cited Medium: Print ISSN: 2223-7747 (Print) Linking ISSN: 22237747 NLM ISO Abbreviation: Plants (Basel) Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Basel, Switzerland : MDPI AG, [2012]-
مستخلص: Platonia insignis is a fruit tree native to Brazil of increasing economic importance, with its pulp trading among the highest market values. This study aimed to evaluate the structure and genomic diversity of P. insignis ( bacurizeiro ) accessions from six locations in the Brazilian States of Roraima, Amazonas, Pará (Amazon biome), and Maranhão (Cerrado biome). A total of 2031 SNP markers were obtained using genotyping-by-sequencing (GBS), from which 625 outlier SNPs were identified. High genetic structure was observed, with most of the genetic variability (59%) concentrated among locations, mainly between biomes (Amazon and Cerrado). A positive and significant correlation (r = 0.85; p < 0.005) was detected between genetic and geographic distances, indicating isolation by distance. The highest genetic diversity was observed for the location in the Cerrado biome ( H E = 0.1746; H O = 0.2078). The locations in the Amazon biome showed low genetic diversity indexes with significant levels of inbreeding. The advance of urban areas, events of burning, and expansion of agricultural activities are most probably the main factors for the genetic diversity reduction of P. insignis . Approaches to functional analysis showed that most of the outlier loci found may be related to genes involved in cellular and metabolic processes.
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فهرسة مساهمة: Keywords: Amazonian fruits; SNPs; bacurizeiro trees; conservation genetics; genotyping-by-sequencing
تواريخ الأحداث: Date Created: 20240413 Latest Revision: 20240425
رمز التحديث: 20240425
مُعرف محوري في PubMed: PMC11013813
DOI: 10.3390/plants13071033
PMID: 38611562
قاعدة البيانات: MEDLINE
الوصف
تدمد:2223-7747
DOI:10.3390/plants13071033