دورية أكاديمية
أعرض في EDS

Identification of core genes involved in the response of Apocynum venetum to salt stress based on transcriptome sequencing and WGCNA.

التفاصيل البيبلوغرافية
العنوان: Identification of core genes involved in the response of Apocynum venetum to salt stress based on transcriptome sequencing and WGCNA.
المؤلفون: Zhen X; Key Laboratory of Grassland Resources of Ministry of Education, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, Inner Mongolia Hohhot, China.; Inner Mongolia Weather Modification Center, Inner Mongolia Hohhot, China., Liu X; Inner Mongolia Climate Center, Hohhot, China., Zhang X; Key Laboratory of Grassland Resources of Ministry of Education, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, Inner Mongolia Hohhot, China., Luo S; College of Plant Protection, Yangzhou University, Yangzhou, China., Wang W; Jining Medical University, Jining, China., Wan T; Key Laboratory of Grassland Resources of Ministry of Education, College of Grassland, Resources and Environment, Inner Mongolia Agricultural University, Inner Mongolia Hohhot, China.
المصدر: PloS one [PLoS One] 2024 Apr 30; Vol. 19 (4), pp. e0300277. Date of Electronic Publication: 2024 Apr 30 (Print Publication: 2024).
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE
أسماء مطبوعة: Original Publication: San Francisco, CA : Public Library of Science
مواضيع طبية MeSH: Apocynum*/genetics , Gene Expression Regulation, Plant*/drug effects , Salt Stress*/genetics , Transcriptome*, Gene Regulatory Networks/drug effects ; Gene Expression Profiling ; Salt Tolerance/genetics ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Genes, Plant ; Plant Leaves/genetics
مستخلص: Apocynum venetum L. belongs to the Apocynaceae family and is a plant that is highly resistant to stress. It is important in the fields of ecology, feeding, industry and medicine. The molecular mechanism underlying salt tolerance has not been elucidated. In this study, RNA-seq based transcriptome sequencing of A. venetum leaves after 0, 2, 6, 12, 24 and 48 h of treatment with 300 mM NaCl was performed. We conducted a comprehensive analysis of the transcriptome expression profiles of A. venetum under salt stress using the WGCNA method and identified red, black, and brown as the core modules regulating the salt tolerance of A. venetum. A co-expression regulatory network was constructed to identify the core genes in the module according to the correlations between genes. The genes TRINITY_DN102_c0_g1 (serine carboxypeptidase), TRINITY_DN3073_c0_g1 (SOS signaling pathway) and TRINITY_DN6732_c0_g1 (heat shock transcription factor) in the red module were determined to be the core genes. Two core genes in the black module, TRINITY_DN9926_c0_g1 and TRINITY_DN7962_c0_g1, are pioneer candidate salt tolerance-associated genes in A. venetum. The genes in the brown module were mainly enriched in two pathways, namely photosynthesis and osmotic balance. Among them, the TRINITY_DN6321_c0_g2 and TRINITY_DN244_c0_g1 genes encode aquaporin, which is helpful for maintaining the cell water balance and plays a protective role in defending A. venetum under abiotic stress. Our findings contribute to the identification of core genes involved in the response of A. venetum to salt stress.
Competing Interests: The authors have declared that no competing interests exist.
(Copyright: © 2024 Zhen et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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المشرفين على المادة: 0 (Plant Proteins)
تواريخ الأحداث: Date Created: 20240430 Date Completed: 20240430 Latest Revision: 20240502
رمز التحديث: 20240502
مُعرف محوري في PubMed: PMC11060595
DOI: 10.1371/journal.pone.0300277
PMID: 38687723
قاعدة البيانات: MEDLINE
الوصف
تدمد:1932-6203
DOI:10.1371/journal.pone.0300277