دورية أكاديمية

Biochemical Separation of Cytoplasmic and Nuclear Fraction for Downstream Molecular Analysis.

التفاصيل البيبلوغرافية
العنوان: Biochemical Separation of Cytoplasmic and Nuclear Fraction for Downstream Molecular Analysis.
المؤلفون: Huynh HT; Department of Medical Biochemistry and Cell biology, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.; Wallenberg Centre for Molecular and Translational Medicine, University of Gothenburg, Gothenburg, Sweden., Shcherbinina E; Department of Medical Biochemistry and Cell biology, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.; Wallenberg Centre for Molecular and Translational Medicine, University of Gothenburg, Gothenburg, Sweden., Huang HC; Department of Medical Biochemistry and Cell biology, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.; Wallenberg Centre for Molecular and Translational Medicine, University of Gothenburg, Gothenburg, Sweden., Rezaei R; Department of Medical Biochemistry and Cell biology, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.; Wallenberg Centre for Molecular and Translational Medicine, University of Gothenburg, Gothenburg, Sweden., Sarshad AA; Department of Medical Biochemistry and Cell biology, Institute of Biomedicine, University of Gothenburg, Gothenburg, Sweden.; Wallenberg Centre for Molecular and Translational Medicine, University of Gothenburg, Gothenburg, Sweden.
المصدر: Current protocols [Curr Protoc] 2024 May; Vol. 4 (5), pp. e1042.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: John Wiley & Sons Country of Publication: United States NLM ID: 101773894 Publication Model: Print Cited Medium: Internet ISSN: 2691-1299 (Electronic) Linking ISSN: 26911299 NLM ISO Abbreviation: Curr Protoc Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Hoboken, NJ : John Wiley & Sons, [2021]-
مواضيع طبية MeSH: Cytoplasm*/metabolism , Cytoplasm*/chemistry , Cell Nucleus*/metabolism , Cell Nucleus*/chemistry , Cell Fractionation*/methods, Humans ; Electrophoresis, Polyacrylamide Gel ; Blotting, Western
مستخلص: Biochemical fractionation is a technique used to isolate and separate distinct cellular compartments, critical for dissecting cellular mechanisms and molecular pathways. Herein we outline a biochemical fraction methodology for isolation of ultra-pure nuclei and cytoplasm. This protocol utilizes hypotonic lysis buffer to suspend cells, coupled with a calibrated centrifugation strategy, for enhanced separation of cytoplasm from the nuclear fraction. Subsequent purification steps ensure the integrity of the isolated nuclear fraction. Overall, this method facilitates accurate protein localization, essential for functional studies, demonstrating its efficacy in separating cellular compartments. © 2024 The Authors. Current Protocols published by Wiley Periodicals LLC. Basic Protocol: Biochemical fractionation Support Protocol 1: Protein quantification using Bradford assay Support Protocol 2: SDS/PAGE and Western blotting.
(© 2024 The Authors. Current Protocols published by Wiley Periodicals LLC.)
References: Alberts, B. (2002). Molecular biology of the cell (4th ed.). Garland Science. Publisher description http://www.loc.gov/catdir/enhancements/fy0652/2001054471‐d.html.
Fu, X., Liang, C., Li, F., Wang, L., Wu, X., Lu, A., Xiao, G., & Zhang, G. (2018). The rules and functions of nucleocytoplasmic shuttling proteins. International Journal of Molecular Sciences, 19(5), 1445. https://doi.org/10.3390/ijms19051445.
Gagnon, K. T., Li, L., Janowski, B. A., & Corey, D. R. (2014). Analysis of nuclear RNA interference in human cells by subcellular fractionation and Argonaute loading. Nature Protocols, 9(9), 2045–2060. https://doi.org/10.1038/nprot.2014.135.
Gallagher, S. R., & Desjardins, P. (2011). Quantitation of nucleic acids and proteins. Current Protocols Essential Laboratory Techniques, 5(1), 2.2.1–2.2.36. https://doi.org/10.1002/9780470089941.et0202s5.
Huang, H.‐C., Lobo, V., Schön, K., Nowak, I., Westholm, J. O., Fernandez, C., Patel, A. A. H., Wiel, C., Sayin, V. I., Anastasakis, D. G., Angeletti, D., & Sarshad, A. A. (2024). Nuclear RNAi modulates influenza a virus infectivity by downregulating Type‐I interferon response. BioRxiv, 2024.2003.2007.583365. https://doi.org/10.1101/2024.03.07.583365.
Jadot, M., Boonen, M., Thirion, J., Wang, N., Xing, J., Zhao, C., Tannous, A., Qian, M., Zheng, H., Everett, J. K., Moore, D. F., Sleat, D. E., & Lobel, P. (2017). Accounting for protein subcellular localization: A compartmental map of the rat liver proteome. Molecular & Cellular Proteomics, 16(2), 194–212. https://doi.org/10.1074/mcp.M116.064527.
Johnson, K. C., Kilikevicius, A., Hofman, C., Hu, J., Liu, Y., Aguilar, S., Graswich, J., Han, Y., Wang, T., Westcott, J. M., Brekken, R. A., Peng, L., Karagkounis, G., & Corey, D. R. (2023). Nuclear localization of Argonaute 2 is affected by cell density and may relieve repression by microRNAs. Nucleic Acids Research, 52, 1930–1952. https://doi.org/10.1093/nar/gkad1155.
Kielkopf, C. L., Bauer, W., & Urbatsch, I. L. (2020). Bradford assay for determining protein concentration. Cold Spring Harbor Protocols, 2020(4), 102269. https://doi.org/10.1101/pdb.prot102269.
Liu, Y., Li, P., Fan, L., & Wu, M. (2018). The nuclear transportation routes of membrane‐bound transcription factors. Cell Communication and Signaling, 16(1), 12. https://doi.org/10.1186/s12964‐018‐0224‐3.
Lobo, V., Nowak, I., Fernandez, C., Muler, A. I. C., Westholm, J. O., Huang, H.‐C., Fabrik, I., Huynh, H. T., Shcherbinina, E., Poyraz, M., Härtlova, A., Benhalevy, D., Angeletti, D., & Sarshad, A. A. (2024). Loss of Lamin A leads to the nuclear translocation of AGO2 and compromised RNA interference. BioRxiv, 2023.2006.2005.543674. https://doi.org/10.1101/2023.06.05.543674.
Mahmood, T., & Yang, P. C. (2012). Western blot: Technique, theory, and trouble shooting. North American Journal of Medicine and Science, 4(9), 429–434. https://doi.org/10.4103/1947‐2714.100998.
Ni, D., Xu, P., Sabanayagam, D., & Gallagher, S. R. (2016). Protein blotting: Immunoblotting. Current Protocols Essential Laboratory Techniques, 12(1), 8.3.1–8.3.40. https://doi.org/10.1002/9780470089941.et0803s12.
Sarshad, A. A., Juan, A. H., Muler, A. I. C., Anastasakis, D. G., Wang, X., Genzor, P., Feng, X., Tsai, P. F., Sun, H. W., Haase, A. D., Sartorelli, V., & Hafner, M. (2018). Argonaute‐miRNA complexes silence target mRNAs in the nucleus of mammalian stem cells. Molecular Cell, 71(6), 1040–1050.e1048. https://doi.org/10.1016/j.molcel.2018.07.020.
Senichkin, V. V., Prokhorova, E. A., Zhivotovsky, B., & Kopeina, G. S. (2021). Simple and efficient protocol for subcellular fractionation of normal and apoptotic cells. Cells, 10(4), 852. https://doi.org/10.3390/cells10040852.
فهرسة مساهمة: Keywords: biochemical fractionation; cellular compartmentalization; cytoplasmic extraction; nuclear isolation; protein localization
تواريخ الأحداث: Date Created: 20240520 Date Completed: 20240520 Latest Revision: 20240520
رمز التحديث: 20240520
DOI: 10.1002/cpz1.1042
PMID: 38767195
قاعدة البيانات: MEDLINE