دورية أكاديمية
أعرض في EDS

The promise and pitfalls of synteny in phylogenomics.

التفاصيل البيبلوغرافية
العنوان: The promise and pitfalls of synteny in phylogenomics.
المؤلفون: Steenwyk JL; Howard Hughes Medical Institute, University of California, Berkeley, California, United States of America.; Department of Molecular and Cell Biology, University of California, Berkeley, California, United States of America., King N; Howard Hughes Medical Institute, University of California, Berkeley, California, United States of America.; Department of Molecular and Cell Biology, University of California, Berkeley, California, United States of America.
المصدر: PLoS biology [PLoS Biol] 2024 May 20; Vol. 22 (5), pp. e3002632. Date of Electronic Publication: 2024 May 20 (Print Publication: 2024).
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: San Francisco, CA : Public Library of Science, [2003]-
مواضيع طبية MeSH: Phylogeny* , Synteny* , Genomics*/methods, Animals ; Genome/genetics ; Evolution, Molecular
مستخلص: Reconstructing the tree of life remains a central goal in biology. Early methods, which relied on small numbers of morphological or genetic characters, often yielded conflicting evolutionary histories, undermining confidence in the results. Investigations based on phylogenomics, which use hundreds to thousands of loci for phylogenetic inquiry, have provided a clearer picture of life's history, but certain branches remain problematic. To resolve difficult nodes on the tree of life, 2 recent studies tested the utility of synteny, the conserved collinearity of orthologous genetic loci in 2 or more organisms, for phylogenetics. Synteny exhibits compelling phylogenomic potential while also raising new challenges. This Essay identifies and discusses specific opportunities and challenges that bear on the value of synteny data and other rare genomic changes for phylogenomic studies. Synteny-based analyses of highly contiguous genome assemblies mark a new chapter in the phylogenomic era and the quest to reconstruct the tree of life.
Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: JLS is an advisor for ForensisGroup Inc.
(Copyright: © 2024 Steenwyk, King. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
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تواريخ الأحداث: Date Created: 20240520 Date Completed: 20240520 Latest Revision: 20240522
رمز التحديث: 20240522
مُعرف محوري في PubMed: PMC11105162
DOI: 10.1371/journal.pbio.3002632
PMID: 38768403
قاعدة البيانات: MEDLINE
الوصف
تدمد:1545-7885
DOI:10.1371/journal.pbio.3002632