دورية أكاديمية
Medicago truncatula resources to study legume biology and symbiotic nitrogen fixation.
| العنوان: | Medicago truncatula resources to study legume biology and symbiotic nitrogen fixation. |
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| المؤلفون: | Nandety RS; Institute for Agricultural Biosciences, Oklahoma State University, 3210 Sam Noble Parkway, Ardmore, OK 73401, United States.; USDA-ARS, Cereal Crops Research Unit, Edward T. Schafer Agricultural Research Center, Fargo, ND 58102, United States., Wen J; Institute for Agricultural Biosciences, Oklahoma State University, 3210 Sam Noble Parkway, Ardmore, OK 73401, United States., Mysore KS; Institute for Agricultural Biosciences, Oklahoma State University, 3210 Sam Noble Parkway, Ardmore, OK 73401, United States.; Department of Biochemistry and Molecular Biology, Oklahoma State University, Stillwater, OK 74078, United States. |
| المصدر: | Fundamental research [Fundam Res] 2022 Jul 16; Vol. 3 (2), pp. 219-224. Date of Electronic Publication: 2022 Jul 16 (Print Publication: 2023). |
| نوع المنشور: | Journal Article; Review |
| اللغة: | English |
| بيانات الدورية: | Publisher: Publishing Services by Elsevier B.V. on behalf of KeAi Communications Co. Ltd Country of Publication: China NLM ID: 9918821688906676 Publication Model: eCollection Cited Medium: Internet ISSN: 2667-3258 (Electronic) Linking ISSN: 26673258 NLM ISO Abbreviation: Fundam Res Subsets: PubMed not MEDLINE |
| أسماء مطبوعة: | Original Publication: Beijing Publishing Services by Elsevier B.V. on behalf of KeAi Communications Co. Ltd. [2021]- |
| مستخلص: | Medicago truncatula is a chosen model for legumes towards deciphering fundamental legume biology, especially symbiotic nitrogen fixation. Current genomic resources for M. truncatula include a completed whole genome sequence information for R108 and Jemalong A17 accessions along with the sparse draft genome sequences for other 226 M. truncatula accessions. These genomic resources are complemented by the availability of mutant resources such as retrotransposon ( Tnt1 ) insertion mutants in R108 and fast neutron bombardment (FNB) mutants in A17. In addition, several M. truncatula databases such as small secreted peptides (SSPs) database, transporter protein database, gene expression atlas, proteomic atlas, and metabolite atlas are available to the research community. This review describes these resources and provide information regarding how to access these resources. Competing Interests: The authors declare that they have no conflicts of interest in this work. (© 2022 The Authors. Publishing Services by Elsevier B.V. on behalf of KeAi Communications Co. Ltd.) |
| References: | Proc Natl Acad Sci U S A. 2011 Oct 18;108(42):E864-70. (PMID: 21949378) Plant Cell. 2011 Jun;23(6):2125-42. (PMID: 21719692) Mol Plant Microbe Interact. 2017 May;30(5):399-409. (PMID: 28437159) Front Genet. 2019 May 03;10:421. (PMID: 31130993) Plant Methods. 2021 Jun 16;17(1):62. (PMID: 34134730) New Phytol. 2014 Feb;201(3):1065-1076. (PMID: 24206427) J Integr Plant Biol. 2018 Sep;60(9):878-896. (PMID: 30047576) DNA Res. 2008 Aug;15(4):227-39. (PMID: 18511435) Plant Physiol. 2007 Jun;144(2):588-93. (PMID: 17556522) Plant Physiol. 2013 Sep;163(1):21-9. (PMID: 23898040) Methods Mol Biol. 2018;1822:107-114. (PMID: 30043299) Methods Mol Biol. 2018;1822:39-59. (PMID: 30043295) Plant Cell. 2017 Aug;29(8):1806-1821. (PMID: 28808136) Plant J. 2003 Apr;34(1):95-106. (PMID: 12662312) Nature. 2011 Nov 16;480(7378):520-4. (PMID: 22089132) Plant Physiol. 2009 Nov;151(3):1077-86. (PMID: 19759346) Annu Rev Plant Biol. 2012;63:283-305. (PMID: 22404476) Bioinformatics. 2007 Jun 1;23(11):1418-23. (PMID: 17344243) Plant Physiol. 2017 Dec;175(4):1669-1689. (PMID: 29030416) Plant J. 2019 Jun;98(6):1106-1119. (PMID: 30776165) Int J Mol Sci. 2021 Apr 21;22(9):. (PMID: 33919286) Curr Protoc Plant Biol. 2017 Dec;2(4):318-349. (PMID: 33383982) BMC Genomics. 2014 Apr 27;15:312. (PMID: 24767513) BMC Genomics. 2012 Feb 06;13:60. (PMID: 22309450) New Phytol. 2012 Jul;195(1):71-84. (PMID: 22530598) Plant J. 2016 Oct;88(2):306-317. (PMID: 27322352) Nature. 2010 Jan 14;463(7278):178-83. (PMID: 20075913) Plant Signal Behav. 2013 Jun;8(6):e24464. (PMID: 23603965) Front Plant Sci. 2017 Dec 19;8:2122. (PMID: 29312386) Plant Physiol. 2000 Jul;123(3):845-51. (PMID: 10889234) New Phytol. 2014 Sep;203(4):1305-1314. (PMID: 24916161) BMC Plant Biol. 2022 Feb 22;22(1):77. (PMID: 35193491) BMC Plant Biol. 2014 May 06;14:122. (PMID: 24885873) Plant Biotechnol J. 2018 Jun;16(6):1125-1137. (PMID: 29087011) Curr Opin Plant Biol. 2009 Apr;12(2):193-201. (PMID: 19162532) Nat Plants. 2020 May;6(5):511-521. (PMID: 32393879) Nat Plants. 2018 Dec;4(12):1017-1025. (PMID: 30397259) Plant Physiol. 2006 Nov;142(3):972-83. (PMID: 16963524) Plant Physiol. 2005 Apr;137(4):1228-35. (PMID: 15824285) Bioinformatics. 2019 Jul 15;35(14):2512-2514. (PMID: 30508039) Curr Protoc Plant Biol. 2019 Sep;4(3):e20098. (PMID: 31479208) Sci Rep. 2016 Dec 23;6:39447. (PMID: 28008948) Plant J. 2008 Aug;55(3):504-13. (PMID: 18410479) BMC Genomics. 2017 Aug 4;18(1):578. (PMID: 28778149) Plant Physiol. 2007 May;144(1):18-31. (PMID: 17351058) Science. 2003 Aug 1;301(5633):653-7. (PMID: 12893945) Nucleic Acids Res. 2016 Jan 4;44(D1):D1181-8. (PMID: 26546515) Methods Mol Biol. 2017;1610:25-37. (PMID: 28439855) New Phytol. 2007;174(2):299-303. (PMID: 17388892) Plant Cell. 2020 Jan;32(1):15-41. (PMID: 31649123) PLoS Genet. 2014 Dec 18;10(12):e1004891. (PMID: 25521478) Nat Biotechnol. 2016 Nov;34(11):1198-1205. (PMID: 27748755) New Phytol. 2019 Aug;223(3):1516-1529. (PMID: 31058335) Nat Biotechnol. 2013 Mar;31(3):240-6. (PMID: 23354103) Methods Mol Biol. 2018;1822:161-174. (PMID: 30043304) Plant Cell Physiol. 2008 Jan;49(1):81-91. (PMID: 18065422) Nat Biotechnol. 2011 Nov 06;30(1):83-9. (PMID: 22057054) BMC Genomics. 2016 Feb 27;17:141. (PMID: 26920390) Nat Genet. 2016 Apr;48(4):438-46. (PMID: 26901068) PLoS One. 2013 May 31;8(5):e65688. (PMID: 23741505) Proc Natl Acad Sci U S A. 2019 Mar 12;116(11):5176-5181. (PMID: 30782811) Nucleic Acids Res. 2018 Jul 2;46(W1):W49-W54. (PMID: 29718424) Front Plant Sci. 2012 Jun 11;3:122. (PMID: 22701463) Mol Plant Microbe Interact. 2018 Mar;31(3):287-288. (PMID: 29337641) BMC Genomics. 2017 Mar 27;18(1):261. (PMID: 28347275) Nature. 1989 Jan 26;337(6205):376-80. (PMID: 2536143) Plant Physiol. 2020 May;183(1):399-413. (PMID: 32079733) Plant J. 2020 Aug;103(5):1924-1936. (PMID: 32410353) Plant Physiol Biochem. 2016 Dec;109:190-198. (PMID: 27721134) Plant J. 2013 Jun;74(5):715-29. (PMID: 23489434) Plant Cell Environ. 2016 Oct;39(10):2158-71. (PMID: 27233806) Plant Cell Environ. 2019 May;42(5):1513-1531. (PMID: 30593671) Plant Physiol. 2017 Feb;173(2):921-931. (PMID: 28057894) Hortic Res. 2020 Dec 1;7(1):194. (PMID: 33328470) Mol Ecol. 2017 Nov;26(21):6122-6135. (PMID: 28792680) Plant Physiol. 2010 Jan;152(1):19-28. (PMID: 19923235) Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10754-9. (PMID: 20498057) BMC Bioinformatics. 2009 Dec 22;10:441. (PMID: 20028527) Methods Mol Biol. 2018;1822:61-69. (PMID: 30043296) Plant Cell. 2020 Sep;32(9):2855-2877. (PMID: 32887805) New Phytol. 2016 May;210(3):905-21. (PMID: 26725247) Nucleic Acids Res. 2021 Jan 8;49(D1):D1472-D1479. (PMID: 33166388) Plant Physiol. 2011 May;156(1):240-53. (PMID: 21321255) Plant J. 2008 Apr;54(2):335-47. (PMID: 18208518) Plant Cell. 2014 Apr 29;26(4):1464-1479. (PMID: 24781113) Plant Mol Biol. 2007 Nov;65(5):587-601. (PMID: 17874225) Trends Plant Sci. 2005 May;10(5):229-35. (PMID: 15882655) Metabolites. 2021 Apr 13;11(4):. (PMID: 33924579) Plant Physiol. 2013 Jan;161(1):36-47. (PMID: 23124322) Plant J. 2001 Aug;27(3):235-42. (PMID: 11532169) Plant Cell Physiol. 2021 Nov 17;62(9):1494-1500. (PMID: 34245304) Plant Cell Environ. 2015 Oct;38(10):1997-2011. (PMID: 25707512) |
| فهرسة مساهمة: | Keywords: Medicago gene atlas; Medicago resources; Medicago truncatula; Model legume; Mutagenesis; Tnt1 |
| تواريخ الأحداث: | Date Created: 20240627 Latest Revision: 20240628 |
| رمز التحديث: | 20240628 |
| مُعرف محوري في PubMed: | PMC11197554 |
| DOI: | 10.1016/j.fmre.2022.06.018 |
| PMID: | 38932916 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 2667-3258 |
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| DOI: | 10.1016/j.fmre.2022.06.018 |