دورية أكاديمية
أعرض في EDS

The nature of the last universal common ancestor and its impact on the early Earth system.

التفاصيل البيبلوغرافية
العنوان: The nature of the last universal common ancestor and its impact on the early Earth system.
المؤلفون: Moody ERR; Bristol Palaeobiology Group, School of Earth Sciences, University of Bristol, Bristol, UK. edmund.moody@bristol.ac.uk., Álvarez-Carretero S; Bristol Palaeobiology Group, School of Earth Sciences, University of Bristol, Bristol, UK., Mahendrarajah TA; Department of Marine Microbiology and Biogeochemistry, NIOZ, Royal Netherlands Institute for Sea Research, Den Burg, The Netherlands., Clark JW; Milner Centre for Evolution, Department of Life Sciences, University of Bath, Bath, UK., Betts HC; Bristol Palaeobiology Group, School of Earth Sciences, University of Bristol, Bristol, UK., Dombrowski N; Department of Marine Microbiology and Biogeochemistry, NIOZ, Royal Netherlands Institute for Sea Research, Den Burg, The Netherlands., Szánthó LL; Department of Biological Physics, Eötvös University, Budapest, Hungary.; MTA-ELTE 'Lendulet' Evolutionary Genomics Research Group, Budapest, Hungary.; Institute of Evolution, HUN-REN Center for Ecological Research, Budapest, Hungary., Boyle RA; Global Systems Institute, University of Exeter, Exeter, UK., Daines S; Global Systems Institute, University of Exeter, Exeter, UK., Chen X; Department of Earth Sciences, University College London, London, UK., Lane N; Department of Genetics, Evolution and Environment, University College London, London, UK., Yang Z; Department of Genetics, Evolution and Environment, University College London, London, UK., Shields GA; Department of Earth Sciences, University College London, London, UK., Szöllősi GJ; MTA-ELTE 'Lendulet' Evolutionary Genomics Research Group, Budapest, Hungary.; Institute of Evolution, HUN-REN Center for Ecological Research, Budapest, Hungary.; Model-Based Evolutionary Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan., Spang A; Department of Marine Microbiology and Biogeochemistry, NIOZ, Royal Netherlands Institute for Sea Research, Den Burg, The Netherlands.; Department of Evolutionary & Population Biology, Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, The Netherlands., Pisani D; Bristol Palaeobiology Group, School of Earth Sciences, University of Bristol, Bristol, UK. davide.pisani@bristol.ac.uk.; Bristol Palaeobiology Group, School of Biological Sciences, University of Bristol, Bristol, UK. davide.pisani@bristol.ac.uk., Williams TA; Bristol Palaeobiology Group, School of Biological Sciences, University of Bristol, Bristol, UK. tom.a.williams@bristol.ac.uk., Lenton TM; Global Systems Institute, University of Exeter, Exeter, UK. T.M.Lenton@exeter.ac.uk., Donoghue PCJ; Bristol Palaeobiology Group, School of Earth Sciences, University of Bristol, Bristol, UK. phil.donoghue@bristol.ac.uk.
المصدر: Nature ecology & evolution [Nat Ecol Evol] 2024 Sep; Vol. 8 (9), pp. 1654-1666. Date of Electronic Publication: 2024 Jul 12.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Springer Nature Country of Publication: England NLM ID: 101698577 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2397-334X (Electronic) Linking ISSN: 2397334X NLM ISO Abbreviation: Nat Ecol Evol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [London] : Springer Nature
مواضيع طبية MeSH: Earth, Planet* , Bacteria*/genetics , Bacteria*/classification , Bacteria*/metabolism , Archaea*/genetics , Archaea*/classification, Phylogeny ; Fossils ; Biological Evolution
مستخلص: The nature of the last universal common ancestor (LUCA), its age and its impact on the Earth system have been the subject of vigorous debate across diverse disciplines, often based on disparate data and methods. Age estimates for LUCA are usually based on the fossil record, varying with every reinterpretation. The nature of LUCA's metabolism has proven equally contentious, with some attributing all core metabolisms to LUCA, whereas others reconstruct a simpler life form dependent on geochemistry. Here we infer that LUCA lived ~4.2 Ga (4.09-4.33 Ga) through divergence time analysis of pre-LUCA gene duplicates, calibrated using microbial fossils and isotope records under a new cross-bracing implementation. Phylogenetic reconciliation suggests that LUCA had a genome of at least 2.5 Mb (2.49-2.99 Mb), encoding around 2,600 proteins, comparable to modern prokaryotes. Our results suggest LUCA was a prokaryote-grade anaerobic acetogen that possessed an early immune system. Although LUCA is sometimes perceived as living in isolation, we infer LUCA to have been part of an established ecological system. The metabolism of LUCA would have provided a niche for other microbial community members and hydrogen recycling by atmospheric photochemistry could have supported a modestly productive early ecosystem.
(© 2024. The Author(s).)
References: BMC Evol Biol. 2010 Jul 13;10:210. (PMID: 20626897)
Syst Biol. 2002 Jun;51(3):492-508. (PMID: 12079646)
Science. 1978 Jan 27;199(4327):395-403. (PMID: 202030)
Biochim Biophys Acta. 2008 Dec;1784(12):1873-98. (PMID: 18801467)
Nature. 2017 Jan 19;541(7637):353-358. (PMID: 28077874)
Trends Ecol Evol. 2020 Jan;35(1):43-55. (PMID: 31606140)
Nat Microbiol. 2021 Jul;6(7):946-959. (PMID: 34155373)
Nat Microbiol. 2016 Jul 25;1(9):16116. (PMID: 27562259)
Nat Microbiol. 2016 Nov 25;1:16229. (PMID: 27886195)
Genome Res. 2003 Mar;13(3):407-12. (PMID: 12618371)
J Biol Chem. 2006 Sep 15;281(37):26922-31. (PMID: 16829676)
Philos Trans R Soc Lond B Biol Sci. 2007 Oct 29;362(1486):1887-925. (PMID: 17255002)
Res Microbiol. 2006 Jan-Feb;157(1):57-68. (PMID: 16431085)
BMC Bioinformatics. 2003 Sep 11;4:41. (PMID: 12969510)
Nucleic Acids Res. 2002 Jul 15;30(14):3059-66. (PMID: 12136088)
Proc Natl Acad Sci U S A. 1989 Dec;86(23):9355-9. (PMID: 2531898)
Mol Biol Evol. 2021 Dec 9;38(12):5825-5829. (PMID: 34597405)
BMC Ecol Evol. 2022 Jan 5;22(1):1. (PMID: 34986784)
Proc Natl Acad Sci U S A. 1989 Sep;86(17):6661-5. (PMID: 2528146)
Nature. 2010 May 13;465(7295):219-22. (PMID: 20463738)
Science. 1999 Jun 25;284(5423):2124-9. (PMID: 10381871)
Nat Ecol Evol. 2020 Dec;4(12):1661-1672. (PMID: 33077930)
Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):E4602-E4611. (PMID: 28533395)
Mol Biol Evol. 2019 Dec 1;36(12):2737-2747. (PMID: 31504731)
Syst Biol. 2007 Jun;56(3):453-66. (PMID: 17558967)
Orig Life. 1984;14(1-4):75-82. (PMID: 11536587)
Mol Biol Evol. 2006 Jan;23(1):212-26. (PMID: 16177230)
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W29-37. (PMID: 21593126)
Ecol Evol. 2022 Jun 03;12(6):e8930. (PMID: 35784055)
Nat Ecol Evol. 2017 Jun 19;1:193. (PMID: 29388565)
Nature. 2020 Sep;585(7825):357-362. (PMID: 32939066)
Syst Biol. 2013 Nov;62(6):901-12. (PMID: 23925510)
Mol Biol Evol. 2007 Aug;24(8):1586-91. (PMID: 17483113)
Nature. 2013 Jul 25;499(7459):431-7. (PMID: 23851394)
Mol Biol Evol. 2011 Jul;28(7):2161-72. (PMID: 21310946)
Appl Environ Microbiol. 2016 Jun 30;82(14):4056-4069. (PMID: 27208103)
Biol Lett. 2013 Oct 23;9(5):20130608. (PMID: 24046876)
Nature. 2015 May 14;521(7551):173-179. (PMID: 25945739)
Philos Trans R Soc Lond B Biol Sci. 2016 Jul 19;371(1699):. (PMID: 27325838)
Nat Rev Microbiol. 2014 Dec;12(12):809-21. (PMID: 25383604)
Front Microbiol. 2012 Jan 13;2:284. (PMID: 22347874)
Nat Methods. 2021 Apr;18(4):366-368. (PMID: 33828273)
Mol Biol Evol. 2007 Sep;24(9):2139-50. (PMID: 17652333)
Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12355-60. (PMID: 23776247)
Nat Microbiol. 2021 Jan;6(1):3-6. (PMID: 33349678)
Nat Microbiol. 2023 Jan;8(1):40-54. (PMID: 36604515)
Proc Natl Acad Sci U S A. 2015 May 26;112(21):6670-5. (PMID: 25964353)
Genome Biol Evol. 2014 Dec 19;7(1):191-204. (PMID: 25527841)
Protoplasma. 2005 Dec;227(1):53-64. (PMID: 16389494)
Mol Biol Evol. 1998 Dec;15(12):1647-57. (PMID: 9866200)
PLoS Comput Biol. 2011 Oct;7(10):e1002195. (PMID: 22039361)
Mol Biol Evol. 2010 Aug;27(8):1877-85. (PMID: 20203288)
J Mol Evol. 1977 Sep 20;10(1):1-6. (PMID: 903983)
Nat Ecol Evol. 2020 Jan;4(1):138-147. (PMID: 31819234)
Front Bioinform. 2023 Sep 01;3:1233281. (PMID: 37727796)
Mol Biol Evol. 2020 May 1;37(5):1530-1534. (PMID: 32011700)
Nat Ecol Evol. 2024 Sep;8(9):1654-1666. (PMID: 38997462)
Nat Ecol Evol. 2018 Oct;2(10):1556-1562. (PMID: 30127539)
Mol Biol Evol. 2018 Feb 1;35(2):518-522. (PMID: 29077904)
BMC Evol Biol. 2003 Jan 6;3:2. (PMID: 12515582)
Proc Natl Acad Sci U S A. 2019 Apr 2;116(14):6647-6652. (PMID: 30894492)
Genome Biol. 2006;7(10):118. (PMID: 17081279)
Philos Trans R Soc Lond B Biol Sci. 2015 Sep 26;370(1678):20140335. (PMID: 26323765)
Bioinformatics. 2009 Aug 1;25(15):1972-3. (PMID: 19505945)
Nature. 2008 Dec 18;456(7224):942-5. (PMID: 19037246)
Nucleic Acids Res. 2018 Jul 2;46(W1):W510-W513. (PMID: 29718427)
Philos Trans R Soc Lond B Biol Sci. 2019 May 13;374(1772):20180087. (PMID: 30905284)
Nat Microbiol. 2022 Dec;7(12):2114-2127. (PMID: 36411352)
Life (Basel). 2015 Mar 10;5(1):818-40. (PMID: 25764277)
Nat Rev Microbiol. 2003 Nov;1(2):127-36. (PMID: 15035042)
Science. 2006 Mar 3;311(5765):1283-7. (PMID: 16513982)
Nucleic Acids Res. 2011 Jan;39(Database issue):D38-51. (PMID: 21097890)
Nature. 2019 Aug;572(7770):451-460. (PMID: 31435057)
Nature. 2015 Jul 9;523(7559):208-11. (PMID: 26083755)
J Am Chem Soc. 2009 Feb 25;131(7):2420-1. (PMID: 19178276)
Mol Biol Evol. 2011 Sep;28(9):2439-42. (PMID: 21498604)
Trends Microbiol. 2011 Dec;19(12):580-7. (PMID: 22018741)
Elife. 2022 Feb 22;11:. (PMID: 35190025)
J Mol Evol. 1999 Oct;49(4):413-23. (PMID: 10485999)
Nucleic Acids Res. 2000 Jan 1;28(1):27-30. (PMID: 10592173)
Nat Rev Microbiol. 2020 Nov;18(11):661-670. (PMID: 32665595)
Proc Natl Acad Sci U S A. 2016 Sep 27;113(39):10802-6. (PMID: 27621460)
Nat Commun. 2023 Nov 17;14(1):7456. (PMID: 37978174)
Mol Biol Evol. 2008 Aug;25(8):1619-30. (PMID: 18463089)
Nature. 2023 Jun;618(7967):992-999. (PMID: 37316666)
Science. 2021 May 7;372(6542):. (PMID: 33958449)
Cell Host Microbe. 2022 Jul 13;30(7):917-929. (PMID: 35834963)
J Mol Biol. 1990 Oct 5;215(3):403-10. (PMID: 2231712)
Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. (PMID: 15034147)
Nucleic Acids Res. 2005 Jan 20;33(2):511-8. (PMID: 15661851)
Nat Commun. 2019 Dec 2;10(1):5477. (PMID: 31792218)
Nucleic Acids Res. 2003 Jan 1;31(1):371-3. (PMID: 12520025)
معلومات مُعتمدة: 62220 John Templeton Foundation (JTF); BB/T012773/1 RCUK | Biotechnology and Biological Sciences Research Council (BBSRC); BB/T012951/1 RCUK | Biotechnology and Biological Sciences Research Council (BBSRC); GBMF9741 Gordon and Betty Moore Foundation (Gordon E. and Betty I. Moore Foundation); GBMF9346 Gordon and Betty Moore Foundation (Gordon E. and Betty I. Moore Foundation); 714774 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020); 947317 EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020); URF Royal Society; RF-2022-167 Leverhulme Trust
تواريخ الأحداث: Date Created: 20240712 Date Completed: 20240909 Latest Revision: 20240912
رمز التحديث: 20240912
مُعرف محوري في PubMed: PMC11383801
DOI: 10.1038/s41559-024-02461-1
PMID: 38997462
قاعدة البيانات: MEDLINE
الوصف
تدمد:2397-334X
DOI:10.1038/s41559-024-02461-1