دورية أكاديمية
Five centuries of genome evolution and multi-host adaptation of Campylobacter jejuni in Brazil.
| العنوان: | Five centuries of genome evolution and multi-host adaptation of Campylobacter jejuni in Brazil. |
|---|---|
| المؤلفون: | Buiatte ABG; Molecular Epidemiology Laboratory, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil.; Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA., Souza SSR; Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA., Costa LRM; Molecular Epidemiology Laboratory, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil., Peres PABM; Nanobiotechnology Laboratory, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil., de Melo RT; Molecular Epidemiology Laboratory, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil., Sommerfeld S; Infectious Disease Laboratory, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil., Fonseca BB; Infectious Disease Laboratory, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil., Zac Soligno NI; Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA., Ikhimiukor OO; Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA., Armendaris PM; Federal Agriculture Defense Laboratory/RS - LFDA/RS, Porto Alegre, Rio Grande do Sul, Brazil., Andam CP; Department of Biological Sciences, University at Albany, State University of New York, Albany, New York, USA., Rossi DA; Molecular Epidemiology Laboratory, Federal University of Uberlândia, Uberlândia, Minas Gerais, Brazil. |
| المصدر: | Microbial genomics [Microb Genom] 2024 Jul; Vol. 10 (7). |
| نوع المنشور: | Journal Article |
| اللغة: | English |
| بيانات الدورية: | Publisher: Microbiology Society Country of Publication: England NLM ID: 101671820 Publication Model: Print Cited Medium: Internet ISSN: 2057-5858 (Electronic) Linking ISSN: 20575858 NLM ISO Abbreviation: Microb Genom Subsets: MEDLINE |
| أسماء مطبوعة: | Publication: Oct. 2015- : [London] : Microbiology Society Original Publication: [London] : Society for General Microbiology, [2015]- |
| مواضيع طبية MeSH: | Campylobacter jejuni*/genetics , Campylobacter jejuni*/drug effects , Campylobacter jejuni*/isolation & purification , Campylobacter jejuni*/classification , Chickens*/microbiology , Genome, Bacterial* , Evolution, Molecular*, Brazil ; Animals ; Humans ; Campylobacter Infections/microbiology ; Campylobacter Infections/veterinary ; Host Adaptation/genetics ; Anti-Bacterial Agents/pharmacology ; Drug Resistance, Multiple, Bacterial/genetics ; Phylogeny |
| مستخلص: | Consumption of raw, undercooked or contaminated animal food products is a frequent cause of Campylobacter jejuni infection. Brazil is the world's third largest producer and a major exporter of chicken meat, yet population-level genomic investigations of C. jejuni in the country remain scarce. Analysis of 221 C . jejuni genomes from Brazil shows that the overall core and accessory genomic features of C. jejuni are influenced by the identity of the human or animal source. Of the 60 sequence types detected, ST353 is the most prevalent and consists of samples from chicken and human sources. Notably, we identified the presence of diverse bla genes from the OXA-61 and OXA-184 families that confer beta-lactam resistance as well as the operon cmeABCR related to multidrug efflux pump, which contributes to resistance against tetracyclines, macrolides and quinolones. Based on limited data, we estimated the most recent common ancestor of ST353 to the late 1500s, coinciding with the time the Portuguese first arrived in Brazil and introduced domesticated chickens into the country. We identified at least two instances of ancestral chicken-to-human infections in ST353. The evolution of C. jejuni in Brazil was driven by the confluence of clinically relevant genetic elements, multi-host adaptation and clonal population growth that coincided with major socio-economic changes in poultry farming. |
| References: | Proc Natl Acad Sci U S A. 2020 May 19;117(20):11018-11028. (PMID: 32366649) Sci Rep. 2018 Feb 14;8(1):3028. (PMID: 29445215) Antimicrob Agents Chemother. 2002 Jul;46(7):2124-31. (PMID: 12069964) Syst Biol. 2022 Aug 10;71(5):1073-1087. (PMID: 34893904) Sci Rep. 2021 Jun 16;11(1):12728. (PMID: 34135355) Front Microbiol. 2018 Oct 16;9:2432. (PMID: 30386311) Proc Natl Acad Sci U S A. 2022 Dec 13;119(50):e2211217119. (PMID: 36469788) Appl Environ Microbiol. 2009 Aug;75(15):5064-73. (PMID: 19502436) Antimicrob Agents Chemother. 2006 Nov;50(11):3893-6. (PMID: 16940070) Curr Opin Infect Dis. 2019 Oct;32(5):453-460. (PMID: 31305492) J Appl Microbiol. 2010 Feb;108(2):591-9. (PMID: 19702866) Nucleic Acids Res. 2023 Jan 6;51(D1):D690-D699. (PMID: 36263822) Prev Vet Med. 2011 Sep 1;101(3-4):148-56. (PMID: 20832879) J Infect. 2021 Feb;82(2):216-226. (PMID: 33275955) J Neurol Neurosurg Psychiatry. 1996 Sep;61(3):279-84. (PMID: 8795599) Methods Mol Biol. 2014;1079:155-70. (PMID: 24170401) J Appl Microbiol. 2016 Aug;121(2):561-8. (PMID: 27206561) Antimicrob Agents Chemother. 2009 Aug;53(8):3357-64. (PMID: 19506058) Nat Commun. 2018 Nov 30;9(1):5114. (PMID: 30504855) Curr Microbiol. 2021 Jun;78(6):2242-2250. (PMID: 33830320) FEMS Microbiol Lett. 1994 Jul 1;120(1-2):13-7. (PMID: 8056285) Poult Sci. 2018 Oct 1;97(10):3645-3651. (PMID: 29850847) Lancet. 2021 Mar 27;397(10280):1214-1228. (PMID: 33647239) FEMS Microbiol Lett. 2014 Jul;356(1):8-19. (PMID: 24888326) PLoS One. 2021 Feb 11;16(2):e0246571. (PMID: 33571292) Bioinformatics. 2014 May 1;30(9):1312-3. (PMID: 24451623) Antimicrob Agents Chemother. 2022 May 17;66(5):e0168721. (PMID: 35404076) Microb Genom. 2016 Apr 29;2(4):e000056. (PMID: 28348851) PLoS One. 2020 Jan 24;15(1):e0226238. (PMID: 31978059) Mol Ecol. 2014 May;23(10):2442-51. (PMID: 24689900) Microbiol Rev. 1993 Mar;57(1):138-63. (PMID: 8385262) Emerg Infect Dis. 2020 Nov;26(11):2778-2780. (PMID: 33079047) Antimicrob Agents Chemother. 2005 Jul;49(7):2753-9. (PMID: 15980346) Rev Inst Med Trop Sao Paulo. 2017 Dec 21;59:e77. (PMID: 29267585) Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13950-5. (PMID: 16172379) Mol Biol Rep. 2020 Jan;47(1):671-681. (PMID: 31749118) Med Microbiol Immunol. 2012 May;201(2):177-87. (PMID: 22102098) Appl Environ Microbiol. 2010 Aug;76(15):5269-77. (PMID: 20525862) PLoS One. 2015 Dec 04;10(12):e0143587. (PMID: 26636679) Nucleic Acids Res. 2019 Jun 20;47(11):5539-5549. (PMID: 31076776) Food Microbiol. 2019 Sep;82:489-496. (PMID: 31027810) Foodborne Pathog Dis. 2020 Jan;17(1):23-28. (PMID: 31509036) Infect Genet Evol. 2021 Nov;95:105018. (PMID: 34332158) Sci Rep. 2021 May 14;11(1):10358. (PMID: 33990625) Nucleic Acids Res. 2021 Jul 2;49(W1):W293-W296. (PMID: 33885785) Nat Rev Microbiol. 2018 Sep;16(9):551-565. (PMID: 29892020) Nucleic Acids Res. 2022 Jan 7;50(D1):D912-D917. (PMID: 34850947) Animals (Basel). 2020 Mar 26;10(4):. (PMID: 32224900) OMICS. 2015 Jul;19(7):393-406. (PMID: 26061459) Mol Microbiol. 2000 Aug;37(3):501-14. (PMID: 10931344) Microbiol Spectr. 2018 Apr;6(2):. (PMID: 29623873) J Vet Med Sci. 2021 Apr 3;83(3):465-468. (PMID: 33518606) Microorganisms. 2020 Oct 31;8(11):. (PMID: 33142824) J Comput Biol. 2012 May;19(5):455-77. (PMID: 22506599) Microbiol Spectr. 2022 Oct 26;10(5):e0118722. (PMID: 35972275) Mol Biol Evol. 2021 Jan 4;38(1):307-317. (PMID: 32722797) Bioinformatics. 2013 Apr 15;29(8):1072-5. (PMID: 23422339) J Biol Chem. 2004 May 7;279(19):20327-38. (PMID: 14985343) Infect Genet Evol. 2024 Apr;119:105578. (PMID: 38417639) Nucleic Acids Res. 2018 Dec 14;46(22):e134. (PMID: 30184106) Microb Genom. 2023 May;9(5):. (PMID: 37133905) EMBO J. 2003 Feb 17;22(4):945-53. (PMID: 12574130) Genome Res. 2015 Jul;25(7):1043-55. (PMID: 25977477) J Appl Microbiol. 2022 Nov;133(5):3150-3160. (PMID: 35993276) Curr Microbiol. 2015 Sep;71(3):341-6. (PMID: 26100240) PLoS Genet. 2021 Oct 18;17(10):e1009436. (PMID: 34662334) Proc Natl Acad Sci U S A. 2023 Nov 21;120(47):e2307773120. (PMID: 37963246) ISME J. 2016 Mar;10(3):721-9. (PMID: 26305157) PLoS Genet. 2021 Sep 28;17(9):e1009829. (PMID: 34582435) J Clin Microbiol. 2001 Jan;39(1):14-23. (PMID: 11136741) Genome Biol. 2020 Jul 22;21(1):180. (PMID: 32698896) Appl Microbiol Biotechnol. 2023 May;107(9):2725-2754. (PMID: 36941439) J Occup Environ Med. 2011 Feb;53(2):190-5. (PMID: 21270654) Antimicrob Agents Chemother. 2002 Aug;46(8):2644-7. (PMID: 12121947) Infect Genet Evol. 2018 Mar;58:290-293. (PMID: 29306004) Microbiol Spectr. 2023 Feb 14;11(1):e0265922. (PMID: 36622198) Clin Microbiol Rev. 2015 Jul;28(3):687-720. (PMID: 26062576) Syst Biol. 2018 Jul 1;67(4):719-728. (PMID: 29432602) Front Cell Infect Microbiol. 2022 Nov 28;12:979055. (PMID: 36519137) Res Vet Sci. 2020 Oct;132:69-77. (PMID: 32521281) PLoS Negl Trop Dis. 2020 Aug 10;14(8):e0008533. (PMID: 32776937) Wellcome Open Res. 2018 Sep 24;3:124. (PMID: 30345391) Genetics. 1981 Jul;98(3):625-40. (PMID: 17249104) J Bacteriol. 2004 Jun;186(11):3296-303. (PMID: 15150214) Bioinformatics. 2014 Jul 15;30(14):2068-9. (PMID: 24642063) Microb Drug Resist. 2021 May;27(5):660-669. (PMID: 33021437) Nucleic Acids Res. 2015 Feb 18;43(3):e15. (PMID: 25414349) |
| معلومات مُعتمدة: | R35 GM142924 United States GM NIGMS NIH HHS |
| فهرسة مساهمة: | Keywords: Campylobacter jejuni; antimicrobial resistance; genome evolution; population structure; sequence type 353; virulence |
| المشرفين على المادة: | 0 (Anti-Bacterial Agents) |
| تواريخ الأحداث: | Date Created: 20240719 Date Completed: 20240719 Latest Revision: 20240812 |
| رمز التحديث: | 20240813 |
| مُعرف محوري في PubMed: | PMC11316555 |
| DOI: | 10.1099/mgen.0.001274 |
| PMID: | 39028633 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 2057-5858 |
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| DOI: | 10.1099/mgen.0.001274 |