دورية أكاديمية
p K a Calculations of GPCRs: Understanding Protonation States in Receptor Activation.
العنوان: | p K |
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المؤلفون: | Barreto CAV; PhD Programme in Experimental Biology and Biomedicine, Institute for Interdisciplinary Research (IIIUC), University of Coimbra, Casa Costa Alemão, 3030-789 Coimbra, Portugal.; CNC─Center for Neuroscience and Cell Biology, Center for Innovative Biomedicine and Biotechnology, University of Coimbra, 3004-504 Coimbra, Portugal., Vitorino JNM; BioSI─Instituto de Biossistemas e Ciências Integrativas, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal., Reis PBPS; BioSI─Instituto de Biossistemas e Ciências Integrativas, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal., Machuqueiro M; BioSI─Instituto de Biossistemas e Ciências Integrativas, Faculdade de Ciências, Universidade de Lisboa, 1749-016 Lisboa, Portugal., Moreira IS; CNC─Center for Neuroscience and Cell Biology, Center for Innovative Biomedicine and Biotechnology, University of Coimbra, 3004-504 Coimbra, Portugal.; Department of Life Sciences, University of Coimbra, Calçada Martim de Freitas, 3000-456 Coimbra, Portugal. |
المصدر: | Journal of chemical information and modeling [J Chem Inf Model] 2024 Sep 09; Vol. 64 (17), pp. 6850-6856. Date of Electronic Publication: 2024 Aug 16. |
نوع المنشور: | Journal Article |
اللغة: | English |
بيانات الدورية: | Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE |
أسماء مطبوعة: | Original Publication: Washington, D.C. : American Chemical Society, c2005- |
مواضيع طبية MeSH: | Protons* , Receptors, G-Protein-Coupled*/chemistry , Receptors, G-Protein-Coupled*/metabolism , Protein Conformation*, Models, Molecular ; Humans ; Hydrogen-Ion Concentration |
مستخلص: | The increase in the available G protein-coupled receptor (GPCR) structures has been pivotal in helping to understand their activation process. However, the role of protonation-conformation coupling in GPCR activation still needs to be clarified. We studied the protonation behavior of the highly conserved Asp 2.50 residue in five different class A GPCRs (active and inactive conformations) using a linear response approximation (LRA) p K |
References: | ACS Chem Neurosci. 2022 Feb 2;13(3):379-389. (PMID: 35019279) J Am Chem Soc. 2007 Jan 31;129(4):867-72. (PMID: 17243823) J Phys Chem B. 2010 Sep 9;114(35):11659-67. (PMID: 20707376) J Chem Inf Model. 2020 Aug 24;60(8):3969-3984. (PMID: 32692555) J Comput Chem. 2002 Jan 15;23(1):128-37. (PMID: 11913378) Elife. 2019 Dec 19;8:. (PMID: 31855179) J Comput Chem. 2008 Aug;29(11):1859-65. (PMID: 18351591) Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18684-9. (PMID: 22031696) Nucleic Acids Res. 2014 Jan;42(Database issue):D422-5. (PMID: 24304901) Mol Pharmacol. 2008 Sep;74(3):552-61. (PMID: 18509066) J Chem Inf Model. 2020 Oct 26;60(10):4442-4448. (PMID: 32857502) Proteins. 2001 Sep 1;44(4):400-17. (PMID: 11484218) J Chem Theory Comput. 2016 Jan 12;12(1):405-13. (PMID: 26631602) J Chem Inf Model. 2019 Sep 23;59(9):3938-3945. (PMID: 31448910) Protein Cell. 2013 Oct;4(10):747-60. (PMID: 24057762) J Chem Theory Comput. 2014 May 13;10(5):2176-84. (PMID: 26580542) Nat Struct Mol Biol. 2021 Nov;28(11):879-888. (PMID: 34759375) Biochemistry. 2014 Nov 25;53(46):7283-96. (PMID: 25347607) J Chem Theory Comput. 2008 Jan;4(1):116-22. (PMID: 26619985) Nature. 2012 Oct 25;490(7421):508-13. (PMID: 23051748) Nat Commun. 2015 Jul 24;6:7895. (PMID: 26205105) Mol Pharmacol. 1999 Feb;55(2):210-5. (PMID: 9927610) J Biol Chem. 2000 Feb 4;275(5):3121-7. (PMID: 10652295) Proteins. 2004 Mar 1;54(4):744-58. (PMID: 14997570) Biochemistry. 2003 Mar 18;42(10):2759-67. (PMID: 12627940) Int J Mol Sci. 2023 Feb 20;24(4):. (PMID: 36835641) Comput Struct Biotechnol J. 2023 Sep 03;21:4336-4353. (PMID: 37711187) J Mol Biol. 2010 Apr 16;397(5):1339-49. (PMID: 20132827) Pharmacol Rev. 2019 Oct;71(4):571-595. (PMID: 31551350) Nucleic Acids Res. 2021 Jan 8;49(D1):D335-D343. (PMID: 33270898) Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17795-800. (PMID: 18997017) Structure. 2018 Jan 2;26(1):171-180.e2. (PMID: 29249607) Nucleic Acids Res. 2012 Jan;40(Database issue):D370-6. (PMID: 21890895) Trends Biochem Sci. 2014 May;39(5):233-44. (PMID: 24767681) Cell Rep. 2023 Apr 25;42(4):112320. (PMID: 37027306) Nat Methods. 2017 Jan;14(1):71-73. (PMID: 27819658) J Biol Chem. 1988 Mar 25;263(9):4052-5. (PMID: 2831218) J Comput Chem. 2014 Oct 15;35(27):1997-2004. (PMID: 25130509) Biochemistry. 1984 Oct 9;23(21):5054-61. (PMID: 6498176) Front Mol Biosci. 2021 Sep 21;8:715215. (PMID: 34621786) |
المشرفين على المادة: | 0 (Protons) 0 (Receptors, G-Protein-Coupled) |
تواريخ الأحداث: | Date Created: 20240816 Date Completed: 20240909 Latest Revision: 20240914 |
رمز التحديث: | 20240914 |
مُعرف محوري في PubMed: | PMC11388449 |
DOI: | 10.1021/acs.jcim.4c01125 |
PMID: | 39150719 |
قاعدة البيانات: | MEDLINE |
تدمد: | 1549-960X |
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DOI: | 10.1021/acs.jcim.4c01125 |