72-h diurnal RNA-seq analysis of fully expanded third leaves from maize, sorghum, and foxtail millet at 3-h resolution
| العنوان: | 72-h diurnal RNA-seq analysis of fully expanded third leaves from maize, sorghum, and foxtail millet at 3-h resolution |
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| المؤلفون: | Claire Bendix, Yang Zhang, Xianjun Lai, Frank G. Harmon, James C. Schnable |
| المصدر: | BMC research notes, vol 14, iss 1 BMC Research Notes BMC Research Notes, Vol 14, Iss 1, Pp 1-5 (2021) |
| بيانات النشر: | eScholarship, University of California, 2021. |
| سنة النشر: | 2021 |
| مصطلحات موضوعية: | 0301 basic medicine, Setaria, Diurnal rhythms, Bioinformatics, Setaria Plant, Foxtail millet, lcsh:Medicine, RNA-Seq, Data Note, Panacoid grasses, Poaceae, Zea mays, General Biochemistry, Genetics and Molecular Biology, Crop, Transcriptome, 03 medical and health sciences, 0302 clinical medicine, Gene Expression Regulation, Plant, Genetics, 030212 general & internal medicine, lcsh:Science (General), lcsh:QH301-705.5, Illumina dye sequencing, Sorghum, Other Medical and Health Sciences, biology, lcsh:R, food and beverages, Chromosome Mapping, General Medicine, Plant, biology.organism_classification, Fastq file, Maize, Plant Leaves, 030104 developmental biology, Agronomy, lcsh:Biology (General), Gene Expression Regulation, Foxtail, RNA-seq, Biochemistry and Cell Biology, lcsh:Q1-390 |
| الوصف: | Objectives The purpose of this data set is to capture the complete diurnal (i.e., daily) transcriptome of fully expanded third leaves from the C4 panacoid grasses sorghum (Sorghum bicolor), maize (Zea mays), and foxtail millet (Setaria italica) with RNA-seq transcriptome profiling. These data are the cornerstone of a larger project that examined the conservation and divergence of gene expression networks within these crop plants. This data set focuses on temporal changes in gene expression to identify the network architecture responsible for daily regulation of plant growth and metabolic activities. The power of this data set is fine temporal resolution combined with continuous sampling over multiple days. Data description The data set is 72 individual RNA-seq samples representing 24 time course samples each for sorghum, maize, and foxtail millet plants cultivated in a growth chamber under equal intervals of light and darkness. The 24 samples are separated by 3-h intervals so that the data set is a fine scale 72-h analysis of gene expression in the leaves of each plant type. FASTQ files from Illumina sequencing are available at the National Center for Biotechnology Information Sequence Read Archive. |
| وصف الملف: | application/pdf |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f28f69632752e1190732e6213fb2a7b https://escholarship.org/uc/item/1f24g5fk |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.doi.dedup.....6f28f69632752e1190732e6213fb2a7b |
| قاعدة البيانات: | OpenAIRE |
| الوصف غير متاح. |