Image Data Resource: a bioimage data integration and publication platform
| العنوان: | Image Data Resource: a bioimage data integration and publication platform |
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| المؤلفون: | Gabriella Rustici, Anatole Chessel, Jason R. Swedlow, Richard K. Ferguson, Ugis Sarkans, Alvis Brazma, Balint Antal, Simone Leo, Josh Moore, Eleanor Williams, Aleksandra Tarkowska, Simon Li, Rafael E. Carazo Salas |
| المصدر: | Nature Methods Williams, E, Moore, J, Li, S W, Rustici, G, Tarkowska, A, Chessel, A, Leo, S, Antal, B, Ferguson, R K, Sarkans, U, Brazma, A, Carazo Salas, R E & Swedlow, J R 2017, ' Image Data Resource : A bioimage data integration and publication platform ', Nature Methods, vol. 14, no. 8, pp. 775-781 . https://doi.org/10.1038/nmeth.4326 |
| بيانات النشر: | Springer Science and Business Media LLC, 2017. |
| سنة النشر: | 2017 |
| مصطلحات موضوعية: | 0301 basic medicine, Computer science, ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION, Computational resource, computer.software_genre, Bioinformatics, Biochemistry, Data type, Article, 03 medical and health sciences, 0302 clinical medicine, Resource (project management), Software, Molecular Biology, business.industry, Digital pathology, Cell Biology, Data science, 030104 developmental biology, System integration, business, computer, 030217 neurology & neurosurgery, Chemical database, Biotechnology, Data integration |
| الوصف: | Access to primary research data is vital for the advancement of science. To extend the data types supported by community repositories, we built a prototype Image Data Resource (IDR) that collects and integrates imaging data acquired across many different imaging modalities. IDR links data from several imaging modalities, including high-content screening, super-resolution and time-lapse microscopy, digital pathology, public genetic or chemical databases, and cell and tissue phenotypes expressed using controlled ontologies. Using this integration, IDR facilitates the analysis of gene networks and reveals functional interactions that are inaccessible to individual studies. To enable re-analysis, we also established a computational resource based on Jupyter notebooks that allows remote access to the entire IDR. IDR is also an open source platform that others can use to publish their own image data. Thus IDR provides both a novel on-line resource and a software infrastructure that promotes and extends publication and re-analysis of scientific image data. |
| وصف الملف: | application/pdf |
| تدمد: | 1548-7105 1548-7091 |
| URL الوصول: | https://explore.openaire.eu/search/publication?articleId=doi_dedup___::fa825417447f94056ed1e3a8ac4e0c25 https://doi.org/10.1038/nmeth.4326 |
| حقوق: | OPEN |
| رقم الأكسشن: | edsair.doi.dedup.....fa825417447f94056ed1e3a8ac4e0c25 |
| قاعدة البيانات: | OpenAIRE |
Find this article in full text from Springer Verlag. | تدمد: | 15487105 15487091 |
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