دورية أكاديمية
Passionfruit Genomic Database (PGD): a comprehensive resource for passionfruit genomics
| العنوان: | Passionfruit Genomic Database (PGD): a comprehensive resource for passionfruit genomics |
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| المؤلفون: | Chaowei Yu, Peng Wang, Shengjie Zhang, Jindian Liu, Yingyin Cheng, Songbai Zhang, Zujian Wu |
| المصدر: | BMC Genomics, Vol 25, Iss 1, Pp 1-8 (2024) |
| بيانات النشر: | BMC, 2024. |
| سنة النشر: | 2024 |
| المجموعة: | LCC:Biotechnology LCC:Genetics |
| مصطلحات موضوعية: | Passionfruit genomic database, Passiflora edulis, Functional genomics, Transcriptomics, Web server, Biotechnology, TP248.13-248.65, Genetics, QH426-470 |
| الوصف: | Abstract Passionfruit (Passiflora edulis) is a significant fruit crop in the commercial sector, owing to its high nutritional and medicinal value. The advent of high-throughput genomics sequencing technology has led to the publication of a vast amount of passionfruit omics data, encompassing complete genome sequences and transcriptome data under diverse stress conditions. To facilitate the efficient integration, storage, and analysis of these large-scale datasets, and to enable researchers to effectively utilize these omics data, we developed the first passionfruit genome database (PGD). The PGD platform comprises a diverse range of functional modules, including a genome browser, search function, heatmap, gene expression patterns, various tools, sequence alignment, and batch download, thereby providing a user-friendly interface. Additionally, supplementary practical tools have been developed for the PGD, such as gene family analysis tools, gene ontology (GO) terms, a pathway enrichment analysis, and other data analysis and mining tools, which enhance the data’s utilization value. By leveraging the database’s robust scalability, the intention is to continue to collect and integrate passionfruit omics data in the PGD, providing comprehensive and in-depth support for passionfruit research. The PGD is freely accessible via http://passionfruit.com.cn . |
| نوع الوثيقة: | article |
| وصف الملف: | electronic resource |
| اللغة: | English |
| تدمد: | 1471-2164 |
| Relation: | https://doaj.org/toc/1471-2164 |
| DOI: | 10.1186/s12864-024-10069-9 |
| URL الوصول: | https://doaj.org/article/e0d4e590b2b745ab886ccdb7b079c0a2 |
| رقم الأكسشن: | edsdoj.0d4e590b2b745ab886ccdb7b079c0a2 |
| قاعدة البيانات: | Directory of Open Access Journals |
Find this article in full text from Springer Verlag. 
Full Text Finder | تدمد: | 14712164 |
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| DOI: | 10.1186/s12864-024-10069-9 |