دورية أكاديمية

Development of a data science CURE in microbiology using publicly available microbiome datasets

التفاصيل البيبلوغرافية
العنوان: Development of a data science CURE in microbiology using publicly available microbiome datasets
المؤلفون: Evelyn Sun, Stephan G. König, Mihai Cirstea, Steven J. Hallam, Marcia L. Graves, David C. Oliver
المصدر: Frontiers in Microbiology, Vol 13 (2022)
بيانات النشر: Frontiers Media S.A., 2022.
سنة النشر: 2022
المجموعة: LCC:Microbiology
مصطلحات موضوعية: data science, microbiome, amplicon sequencing, undergraduate education, course-based undergraduate experience, Microbiology, QR1-502
الوصف: Scientific and technological advances within the life sciences have enabled the generation of very large datasets that must be processed, stored, and managed computationally. Researchers increasingly require data science skills to work with these datasets at scale in order to convert information into actionable insights, and undergraduate educators have started to adapt pedagogies to fulfill this need. Course-based undergraduate research experiences (CUREs) have emerged as a leading model for providing large numbers of students with authentic research experiences including data science. Originally designed around wet-lab research experiences, CURE models have proliferated and diversified globally to accommodate a broad range of academic disciplines. Within microbiology, diversity metrics derived from microbiome sequence information have become standard data products in research. In some cases, researchers have deposited data in publicly accessible repositories, providing opportunities for reproducibility and comparative analysis. In 2020, with the onset of the COVID-19 pandemic and concomitant shift to remote learning, the University of British Columbia set out to develop an online data science CURE in microbiology. A team of faculty with collective domain expertise in microbiome research and CUREs developed and implemented a data science CURE in which teams of students learn to work with large publicly available datasets, develop and execute a novel scientific research project, and disseminate their findings in the online Undergraduate Journal of Experimental Microbiology and Immunology. Analysis of the resulting student-authored research articles, including comments from peer reviews conducted by subject matter experts, demonstrate high levels of learning effectiveness. Here, we describe core insights from course development and implementation based on a reverse course design model. Our approach to course design may be applicable to the development of other data science CUREs.
نوع الوثيقة: article
وصف الملف: electronic resource
اللغة: English
تدمد: 1664-302X
Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.1018237/full; https://doaj.org/toc/1664-302X
DOI: 10.3389/fmicb.2022.1018237
URL الوصول: https://doaj.org/article/a4d53c756ed243f884c4fb01c37fd15e
رقم الأكسشن: edsdoj.4d53c756ed243f884c4fb01c37fd15e
قاعدة البيانات: Directory of Open Access Journals
الوصف
تدمد:1664302X
DOI:10.3389/fmicb.2022.1018237