مورد إلكتروني
The AEGEAN-169 clade of bacterioplankton is synonymous with SAR11 subclade V (HIMB59) and metabolically distinct
| العنوان: | The AEGEAN-169 clade of bacterioplankton is synonymous with SAR11 subclade V (HIMB59) and metabolically distinct |
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| بيانات النشر: | Uppsala universitet, Science for Life Laboratory, SciLifeLab Uppsala universitet, Institutionen för cell- och molekylärbiologi Univ Southern Calif, Dept Biol Sci, Los Angeles, CA 90007 USA. Univ Southern Calif, Dept Biol Sci, Los Angeles, CA 90007 USA. Univ Southern Calif, Dept Biol Sci, Los Angeles, CA 90007 USA. Univ Southern Calif, Dept Biol Sci, Los Angeles, CA 90007 USA. Univ Chicago, Dept Geophys Sci, Chicago, IL USA. Wageningen Univ & Res, Lab Microbiol, Wageningen, Netherlands. Louisiana State Univ, Dept Biol Sci, Baton Rouge, LA USA.;Louisiana State Univ, Museum Nat Sci, Baton Rouge, LA USA. Univ Southern Calif, Dept Biol Sci, Los Angeles, CA 90007 USA. 2023 |
| تفاصيل مُضافة: | Getz, Eric W. Lanclos, V. Celeste Kojima, Conner Y. Cheng, Chuankai Henson, Michael W. Schön, Max Emil Ettema, Thijs J. G. Faircloth, Brant C. Thrash, J. Cameron |
| نوع الوثيقة: | Electronic Resource |
| مستخلص: | Bacterioplankton of the SAR11 clade are the most abundant marine microorganisms and consist of numerous subclades spanning order-level divergence (Pelagibacterales). The assignment of the earliest diverging subclade V (a.k.a. HIMB59) to the Pelagibacterales is highly controversial, with multiple recent phylogenetic studies placing them completely separate from SAR11. Other than through phylogenomics, subclade V has not received detailed examination due to limited genomes from this group. Here, we assessed the ecogenomic characteristics of subclade V to better understand the role of this group in comparison to the Pelagibacterales. We used a new isolate genome, recently released single-amplified genomes and metagenome-assembled genomes, and previously established SAR11 genomes to perform a comprehensive comparative genomics analysis. We paired this analysis with the recruitment of metagenomes spanning the open ocean, coastal, and brackish systems. Phylogenomics, average amino acid identity, and 16S rRNA gene phylogeny indicate that SAR11 subclade V is synonymous with the ubiquitous AEGEAN-169 clade and support the contention that this group represents a taxonomic family. AEGEAN-169 shared many bulk genome qualities with SAR11, such as streamlining and low GC content, but genomes were generally larger. AEGEAN-169 had overlapping distributions with SAR11 but was metabolically distinct from SAR11 in its potential to transport and utilize a broader range of sugars as well as in the transport of trace metals and thiamin. Thus, regardless of the ultimate phylogenetic placement of AEGEAN-169, these organisms have distinct metabolic capacities that likely allow them to differentiate their niche from canonical SAR11 taxa. |
| مصطلحات الفهرس: | comparative genomics, SAR11, AEGEAN-169, HIMB59, bacterioplankton, Microbiology, Mikrobiologi, Evolutionary Biology, Evolutionsbiologi, Article in journal, info:eu-repo/semantics/article, text |
| DOI: | 10.1128.msystems.00179-23 |
| URL: | mSystems, 2023, 8:3 |
| الإتاحة: | Open access content. Open access content info:eu-repo/semantics/openAccess |
| ملاحظة: | application/pdf English |
| أرقام أخرى: | UPE oai:DiVA.org:uu-511142 0000-0002-5600-281X 0000-0002-0524-8916 0000-0002-4453-4173 0000-0002-6898-6377 0000-0002-1943-0217 doi:10.1128/msystems.00179-23 PMID 37199998 ISI:001026276900001 1399994055 |
| المصدر المساهم: | UPPSALA UNIV LIBR From OAIster®, provided by the OCLC Cooperative. |
| رقم الأكسشن: | edsoai.on1399994055 |
| قاعدة البيانات: | OAIster |
| DOI: | 10.1128.msystems.00179-23 |
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