دورية أكاديمية
أعرض في EDS

Databases and information integration for the Medicago truncatula genome and transcriptome.

التفاصيل البيبلوغرافية
العنوان: Databases and information integration for the Medicago truncatula genome and transcriptome.
المؤلفون: Cannon SB; Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota 55108, USA., Crow JA, Heuer ML, Wang X, Cannon EK, Dwan C, Lamblin AF, Vasdewani J, Mudge J, Cook A, Gish J, Cheung F, Kenton S, Kunau TM, Brown D, May GD, Kim D, Cook DR, Roe BA, Town CD, Young ND, Retzel EF
المصدر: Plant physiology [Plant Physiol] 2005 May; Vol. 138 (1), pp. 38-46.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
اللغة: English
بيانات الدورية: Publisher: American Society of Plant Biologists Country of Publication: United States NLM ID: 0401224 Publication Model: Print Cited Medium: Print ISSN: 0032-0889 (Print) Linking ISSN: 00320889 NLM ISO Abbreviation: Plant Physiol Subsets: MEDLINE
أسماء مطبوعة: Publication: : [Rockville, MD] : American Society of Plant Biologists
Original Publication: Lancaster, Pa., American Society of Plant Physiologists.
مواضيع طبية MeSH: Databases, Genetic* , Genome, Plant* , Internet* , Transcription, Genetic*, Medicago truncatula/*genetics, Base Sequence ; Chromosomes, Artificial, Bacterial
مستخلص: An international consortium is sequencing the euchromatic genespace of Medicago truncatula. Extensive bioinformatic and database resources support the marker-anchored bacterial artificial chromosome (BAC) sequencing strategy. Existing physical and genetic maps and deep BAC-end sequencing help to guide the sequencing effort, while EST databases provide essential resources for genome annotation as well as transcriptome characterization and microarray design. Finished BAC sequences are joined into overlapping sequence assemblies and undergo an automated annotation process that integrates ab initio predictions with EST, protein, and other recognizable features. Because of the sequencing project's international and collaborative nature, data production, storage, and visualization tools are broadly distributed. This paper describes databases and Web resources for the project, which provide support for physical and genetic maps, genome sequence assembly, gene prediction, and integration of EST data. A central project Web site at medicago.org/genome provides access to genome viewers and other resources project-wide, including an Ensembl implementation at medicago.org, physical map and marker resources at mtgenome.ucdavis.edu, and genome viewers at the University of Oklahoma (www.genome.ou.edu), the Institute for Genomic Research (www.tigr.org), and Munich Information for Protein Sequences Center (mips.gsf.de).
التعليقات: Comment in: Plant Physiol. 2005 May;138(1):1-3. (PMID: 15888672)
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تواريخ الأحداث: Date Created: 20050513 Date Completed: 20051101 Latest Revision: 20181113
رمز التحديث: 20221213
مُعرف محوري في PubMed: PMC1104158
DOI: 10.1104/pp.104.059204
PMID: 15888676
قاعدة البيانات: MEDLINE
الوصف
تدمد:0032-0889
DOI:10.1104/pp.104.059204