دورية أكاديمية
The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis.
العنوان: | The MIGenAS integrated bioinformatics toolkit for web-based sequence analysis. |
---|---|
المؤلفون: | Rampp M; Rechenzentrum Garching der Max-Planck-Gesellschaft (RZG), am Max-Planck-Institut für Plasmaphysik, Boltzmannstrasse 2, 85748 Garching, Germany., Soddemann T, Lederer H |
المصدر: | Nucleic acids research [Nucleic Acids Res] 2006 Jul 01; Vol. 34 (Web Server issue), pp. W15-9. |
نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't |
اللغة: | English |
بيانات الدورية: | Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE |
أسماء مطبوعة: | Publication: 1992- : Oxford : Oxford University Press Original Publication: London, Information Retrieval ltd. |
مواضيع طبية MeSH: | Software*, Computational Biology/*methods , Sequence Analysis/*methods, Animals ; Databases, Genetic ; Humans ; Internet ; Mice ; Sequence Alignment ; Systems Integration ; User-Computer Interface |
مستخلص: | We describe a versatile and extensible integrated bioinformatics toolkit for the analysis of biological sequences over the Internet. The web portal offers convenient interactive access to a growing pool of chainable bioinformatics software tools and databases that are centrally installed and maintained by the RZG. Currently, supported tasks comprise sequence similarity searches in public or user-supplied databases, computation and validation of multiple sequence alignments, phylogenetic analysis and protein-structure prediction. Individual tools can be seamlessly chained into pipelines allowing the user to conveniently process complex workflows without the necessity to take care of any format conversions or tedious parsing of intermediate results. The toolkit is part of the Max-Planck Integrated Gene Analysis System (MIGenAS) of the Max Planck Society available at www.migenas.org (click 'Start Toolkit'). |
References: | Bioinformatics. 2005 Apr 1;21(7):951-60. (PMID: 15531603) J Mol Biol. 1999 Sep 17;292(2):195-202. (PMID: 10493868) Nucleic Acids Res. 2003 Jul 1;31(13):3497-500. (PMID: 12824352) Nucleic Acids Res. 1997 Sep 1;25(17):3389-402. (PMID: 9254694) Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W65-71. (PMID: 15980554) Bioinformatics. 2004 Dec 12;20(18):3702-4. (PMID: 15284097) Nucleic Acids Res. 2004 Feb 25;32(4):1363-71. (PMID: 14985472) J Mol Biol. 2000 Sep 8;302(1):205-17. (PMID: 10964570) Proteins. 2000 Aug 15;40(3):502-11. (PMID: 10861942) J Mol Biol. 2004 Jul 16;340(4):783-95. (PMID: 15223320) Bioinformatics. 1999 Mar;15(3):211-8. (PMID: 10222408) Bioinformatics. 2004 Feb 12;20(3):426-7. (PMID: 14960472) Bioinformatics. 2004 Jan 22;20(2):268-70. (PMID: 14734319) Bioinformatics. 2004 Nov 22;20(17):3045-54. (PMID: 15201187) Nucleic Acids Res. 2003 Jan 1;31(1):345-7. (PMID: 12520019) Methods Enzymol. 2003;374:461-91. (PMID: 14696385) Nucleic Acids Res. 2004 Jan 1;32(Database issue):D115-9. (PMID: 14681372) Bioinformatics. 2004 Sep 22;20(14):2228-35. (PMID: 15059818) Bioinformatics. 1998;14(9):755-63. (PMID: 9918945) Bioinformatics. 2001 Apr;17(4):383-4. (PMID: 11301314) Bioinformatics. 2006 Jan 1;22(1):106-11. (PMID: 16257987) J Mol Biol. 2001 Jan 19;305(3):567-80. (PMID: 11152613) Bioinformatics. 2002 Mar;18(3):452-64. (PMID: 11934745) Bioinformatics. 2003 Feb 12;19(3):427-8. (PMID: 12584134) Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W25-8. (PMID: 15980463) Nucleic Acids Res. 2004 Mar 19;32(5):1792-7. (PMID: 15034147) |
تواريخ الأحداث: | Date Created: 20060718 Date Completed: 20060829 Latest Revision: 20240315 |
رمز التحديث: | 20240315 |
مُعرف محوري في PubMed: | PMC1538907 |
DOI: | 10.1093/nar/gkl254 |
PMID: | 16844980 |
قاعدة البيانات: | MEDLINE |
تدمد: | 1362-4962 |
---|---|
DOI: | 10.1093/nar/gkl254 |