دورية أكاديمية
D-CAT: Density and Clustering Annotation Tool for three dimensional electron microscopic volumes.
| العنوان: | D-CAT: Density and Clustering Annotation Tool for three dimensional electron microscopic volumes. |
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| المؤلفون: | Lebbink MN; Biomolecular Imaging, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands., Hekking LH, Geerts WJ, Post JA |
| المصدر: | Journal of structural biology [J Struct Biol] 2012 Feb; Vol. 177 (2), pp. 571-7. Date of Electronic Publication: 2011 Dec 07. |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't |
| اللغة: | English |
| بيانات الدورية: | Publisher: Academic Press Country of Publication: United States NLM ID: 9011206 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-8657 (Electronic) Linking ISSN: 10478477 NLM ISO Abbreviation: J Struct Biol Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: San Diego : Academic Press, c1990- |
| مواضيع طبية MeSH: | Software*, Electron Microscope Tomography/*methods, Cell Membrane/ultrastructure ; Cluster Analysis ; Computer Simulation ; Data Interpretation, Statistical ; Dendritic Cells/ultrastructure ; Humans ; Imaging, Three-Dimensional ; Membrane Proteins/ultrastructure |
| مستخلص: | Three dimensional (3D) electron microscopy techniques have become valuable tools for investigating cellular architecture and the processes that govern it. A vast amount of information is available in every 3D tomogram but the options for presenting this information in a clear and visually appealing way are limited. To address this, we developed D-CAT; a MatLab-application to accurately visualize the distribution of membrane proteins and/or membrane-bound structures. Presence (density) and distribution (clustering, depletion) are presented as color-coded areas on membranes. By using IMOD models both as input and output format, we ensure that the application fits within workflows common in the field of 3D electron microscopy. (Copyright © 2011 Elsevier Inc. All rights reserved.) |
| المشرفين على المادة: | 0 (Membrane Proteins) |
| تواريخ الأحداث: | Date Created: 20111217 Date Completed: 20120605 Latest Revision: 20120220 |
| رمز التحديث: | 20231215 |
| DOI: | 10.1016/j.jsb.2011.11.030 |
| PMID: | 22173221 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1095-8657 |
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| DOI: | 10.1016/j.jsb.2011.11.030 |