دورية أكاديمية
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Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing.

التفاصيل البيبلوغرافية
العنوان: Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing.
المؤلفون: Li YH; Institute of Crop Science, The National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI) / Key Lab of Germplasm Utilization (MOA), Chinese Academy of Agricultural Sciences, 100081 Beijing, China. wangj@genomics.org.cn., Zhao SC, Ma JX, Li D, Yan L, Li J, Qi XT, Guo XS, Zhang L, He WM, Chang RZ, Liang QS, Guo Y, Ye C, Wang XB, Tao Y, Guan RX, Wang JY, Liu YL, Jin LG, Zhang XQ, Liu ZX, Zhang LJ, Chen J, Wang KJ, Nielsen R, Li RQ, Chen PY, Li WB, Reif JC, Purugganan M, Wang J, Zhang MC, Wang J, Qiu LJ
المصدر: BMC genomics [BMC Genomics] 2013 Aug 28; Vol. 14, pp. 579. Date of Electronic Publication: 2013 Aug 28.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE
أسماء مطبوعة: Original Publication: London : BioMed Central, [2000-
مواضيع طبية MeSH: Genome, Plant*, Glycine max/*genetics, Bayes Theorem ; Breeding ; Evolution, Molecular ; Genetics, Population ; Haplotypes ; Humans ; INDEL Mutation ; Molecular Sequence Annotation ; Phylogeny ; Polymorphism, Single Nucleotide ; Quantitative Trait Loci ; Selection, Genetic ; Sequence Analysis, DNA
مستخلص: Background: Artificial selection played an important role in the origin of modern Glycine max cultivars from the wild soybean Glycine soja. To elucidate the consequences of artificial selection accompanying the domestication and modern improvement of soybean, 25 new and 30 published whole-genome re-sequencing accessions, which represent wild, domesticated landrace, and Chinese elite soybean populations were analyzed.
Results: A total of 5,102,244 single nucleotide polymorphisms (SNPs) and 707,969 insertion/deletions were identified. Among the SNPs detected, 25.5% were not described previously. We found that artificial selection during domestication led to more pronounced reduction in the genetic diversity of soybean than the switch from landraces to elite cultivars. Only a small proportion (2.99%) of the whole genomic regions appear to be affected by artificial selection for preferred agricultural traits. The selection regions were not distributed randomly or uniformly throughout the genome. Instead, clusters of selection hotspots in certain genomic regions were observed. Moreover, a set of candidate genes (4.38% of the total annotated genes) significantly affected by selection underlying soybean domestication and genetic improvement were identified.
Conclusions: Given the uniqueness of the soybean germplasm sequenced, this study drew a clear picture of human-mediated evolution of the soybean genomes. The genomic resources and information provided by this study would also facilitate the discovery of genes/loci underlying agronomically important traits.
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تواريخ الأحداث: Date Created: 20130830 Date Completed: 20140630 Latest Revision: 20231213
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC3844514
DOI: 10.1186/1471-2164-14-579
PMID: 23984715
قاعدة البيانات: MEDLINE
الوصف
تدمد:1471-2164
DOI:10.1186/1471-2164-14-579