دورية أكاديمية

A novel clade of unique eukaryotic ribonucleotide reductase R2 subunits is exclusive to apicomplexan parasites.

التفاصيل البيبلوغرافية
العنوان: A novel clade of unique eukaryotic ribonucleotide reductase R2 subunits is exclusive to apicomplexan parasites.
المؤلفون: Munro JB; Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, 21201, USA., Jacob CG, Silva JC
المصدر: Journal of molecular evolution [J Mol Evol] 2013 Sep; Vol. 77 (3), pp. 92-106. Date of Electronic Publication: 2013 Sep 18.
نوع المنشور: Journal Article
اللغة: English
بيانات الدورية: Publisher: Springer-Verlag Country of Publication: Germany NLM ID: 0360051 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1432-1432 (Electronic) Linking ISSN: 00222844 NLM ISO Abbreviation: J Mol Evol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Berlin, New York, Springer-Verlag.
مواضيع طبية MeSH: Apicomplexa/*enzymology , Ribonucleotide Reductases/*chemistry , Ribonucleotide Reductases/*genetics, Apicomplexa/genetics ; Archaea/enzymology ; Bacteria/enzymology ; DNA Replication ; Phylogeny ; Sequence Alignment
مستخلص: Apicomplexa are protist parasites of tremendous medical and economic importance, causing millions of deaths and billions of dollars in losses each year. Apicomplexan-related diseases may be controlled via inhibition of essential enzymes. Ribonucleotide reductase (RNR) provides the only de novo means of synthesizing deoxyribonucleotides, essential precursors for DNA replication and repair. RNR has long been the target of antibacterial and antiviral therapeutics. However, targeting this ubiquitous protein in eukaryotic pathogens may be problematic unless these proteins differ significantly from that of their respective host. The typical eukaryotic RNR enzymes belong to class Ia, and the holoenzyme consists minimally of two R1 and two R2 subunits (α₂β₂). We generated a comparative, annotated, structure-based, multiple-sequence alignment of R2 subunits, identified a clade of R2 subunits unique to Apicomplexa, and determined its phylogenetic position. Our analyses revealed that the apicomplexan-specific sequences share characteristics with both class I R2 and R2lox proteins. The putative radical-harboring residue, essential for the reduction reaction by class Ia R2-containing holoenzymes, was not conserved within this group. Phylogenetic analyses suggest that class Ia subunits are not monophyletic and consistently placed the apicomplexan-specific clade sister to the remaining class Ia eukaryote R2 subunits. Our research suggests that the novel apicomplexan R2 subunit may be a promising candidate for chemotherapeutic-induced inhibition as it differs greatly from known eukaryotic host RNRs and may be specifically targeted.
References: Mol Biol Evol. 2001 Mar;18(3):418-26. (PMID: 11230543)
Cancer Lett. 2005 Jun 1;223(1):67-76. (PMID: 15890238)
FEMS Microbiol Rev. 1993 Nov;12(4):273-92. (PMID: 8268003)
BMC Genomics. 2009 Dec 08;10:589. (PMID: 19995434)
Am J Bot. 2010 Aug;97(8):1342-53. (PMID: 21616887)
FEBS Lett. 2007 Jul 24;581(18):3351-5. (PMID: 17601579)
Biochemistry. 2006 Jul 25;45(29):8823-30. (PMID: 16846225)
J Mol Biol. 2006 Jun 2;359(2):365-77. (PMID: 16631785)
Bioinformatics. 2007 Nov 1;23(21):2947-8. (PMID: 17846036)
Prog Biophys Mol Biol. 2001 Nov;77(3):177-268. (PMID: 11796141)
Trends Biochem Sci. 1994 Jan;19(1):15-8. (PMID: 8140615)
J Protozool. 1988 Nov;35(4):518-20. (PMID: 3143826)
Nat Struct Biol. 1995 Nov;2(11):951-5. (PMID: 7583667)
BMC Evol Biol. 2010 Dec 10;10:383. (PMID: 21143941)
Biol Chem. 2010 Feb-Mar;391(2-3):229-234. (PMID: 20030587)
J Med Chem. 1993 Oct 1;36(20):3005-9. (PMID: 8411018)
Curr Drug Targets. 2009 Mar;10(3):193-201. (PMID: 19275556)
Annu Rev Biochem. 2011;80:733-67. (PMID: 21456967)
Science. 2004 Jul 9;305(5681):245-8. (PMID: 15247479)
J Mol Biol. 1996 Oct 11;262(5):706-20. (PMID: 8876648)
Proc Natl Acad Sci U S A. 1993 Oct 15;90(20):9280-4. (PMID: 8415692)
Biochemistry. 2005 Nov 22;44(46):15366-77. (PMID: 16285741)
Nucleic Acids Res. 2000 Jan 1;28(1):235-42. (PMID: 10592235)
Mycorrhiza. 2010 Oct;20(7):483-96. (PMID: 20177717)
J Biol Chem. 2001 Nov 2;276(44):40647-51. (PMID: 11517226)
Nature. 1994 Aug 18;370(6490):533-9. (PMID: 8052308)
Proc Natl Acad Sci U S A. 1993 Dec 15;90(24):12020-4. (PMID: 8265664)
Nature. 2000 Mar 2;404(6773):42-9. (PMID: 10716435)
Crit Rev Clin Lab Sci. 1997;34(6):503-28. (PMID: 9439883)
Genome Biol. 2004;5(11):R88. (PMID: 15535864)
Mol Biol Evol. 1988 Nov;5(6):603-25. (PMID: 3065587)
Anim Behav. 1999 Dec;58(6):1319-1324. (PMID: 10600155)
Nat Genet. 2007 Jun;39(6):776-80. (PMID: 17486094)
Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10949-54. (PMID: 20534454)
Int J Syst Evol Microbiol. 2000 Jul;50 Pt 4:1673-1681. (PMID: 10939675)
Bioinformatics. 2005 May 1;21(9):2104-5. (PMID: 15647292)
BMC Bioinformatics. 2007 Nov 22;8:460. (PMID: 18034891)
Curr Drug Targets. 2009 Mar;10(3):279-90. (PMID: 19275564)
Proc Natl Acad Sci U S A. 2004 Oct 26;101(43):15386-91. (PMID: 15494441)
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W604-8. (PMID: 16845081)
J Biol Chem. 2006 Mar 24;281(12):7834-41. (PMID: 16436374)
Nature. 2002 Oct 3;419(6906):498-511. (PMID: 12368864)
Methods Mol Biol. 2007;408:93-108. (PMID: 18314579)
Mol Cell Biol. 1997 Oct;17(10):6105-13. (PMID: 9315670)
Mol Cell Biol. 1997 Oct;17(10):6114-21. (PMID: 9315671)
Parasite Immunol. 2009 Sep;31(9):560-73. (PMID: 19691559)
Chem Rev. 2003 Jun;103(6):2167-201. (PMID: 12797828)
Annu Rev Biochem. 1998;67:71-98. (PMID: 9759483)
Mol Biol Evol. 2008 Dec;25(12):2689-98. (PMID: 18820254)
FASEB J. 2006 Jul;20(9):1300-14. (PMID: 16816105)
BMC Evol Biol. 2008 Apr 11;8:108. (PMID: 18405380)
Protein Eng. 1998 Sep;11(9):739-47. (PMID: 9796821)
Proc Biol Sci. 2012 Jun 7;279(1736):2246-54. (PMID: 22298847)
J Biol Inorg Chem. 2010 Mar;15(3):339-49. (PMID: 20225400)
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5633-8. (PMID: 19321420)
J Biol Chem. 2006 Sep 22;281(38):27705-11. (PMID: 16861739)
Bioinformatics. 2008 Feb 15;24(4):581-3. (PMID: 17766271)
J Biol Chem. 2002 Jun 28;277(26):23612-9. (PMID: 11976331)
Parasitol Today. 1999 Aug;15(8):338-42. (PMID: 10407382)
Proc Natl Acad Sci U S A. 2001 Aug 28;98(18):10073-8. (PMID: 11526233)
Trends Parasitol. 2006 Oct;22(10):463-8. (PMID: 16904941)
FEBS Lett. 1997 Sep 8;414(2):449-53. (PMID: 9315738)
Annu Rev Biochem. 2006;75:681-706. (PMID: 16756507)
Bioinformatics. 2003 Aug 12;19(12):1572-4. (PMID: 12912839)
J Mol Evol. 2002 Aug;55(2):138-52. (PMID: 12107591)
Biopolymers. 1983 Dec;22(12):2577-637. (PMID: 6667333)
Curr Drug Targets. 2007 Jan;8(1):31-47. (PMID: 17266529)
Parasitology. 2011 Nov;138(13):1737-49. (PMID: 21118608)
Protein Cell. 2010 May;1(5):435-42. (PMID: 21203958)
Curr Issues Mol Biol. 2012;14(1):9-26. (PMID: 21791713)
DNA Repair (Amst). 2005 Dec 8;4(12):1450-6. (PMID: 16207537)
Science. 2007 May 25;316(5828):1188-91. (PMID: 17525338)
Bioinformatics. 2006 Nov 1;22(21):2688-90. (PMID: 16928733)
Biochemistry. 2004 Jun 22;43(24):7736-42. (PMID: 15196016)
Science. 2006 Mar 3;311(5765):1283-7. (PMID: 16513982)
J Mol Biol. 2005 Apr 8;347(4):749-58. (PMID: 15769467)
Nature. 2008 Oct 9;455(7214):751-6. (PMID: 18843360)
Plant Physiol. 2009 Sep;151(1):461-71. (PMID: 19571309)
Bioinformatics. 2001 Apr;17(4):377-8. (PMID: 11301311)
J Biol Chem. 2000 Dec 1;275(48):38111-9. (PMID: 10984489)
DNA Seq. 2002 Jun;13(3):167-72. (PMID: 12391728)
Nucleic Acids Res. 2005 Apr 22;33(7):2302-9. (PMID: 15849316)
J Eukaryot Microbiol. 2005 Sep-Oct;52(5):399-451. (PMID: 16248873)
Mol Microbiol. 2007 Jan;63(1):22-34. (PMID: 17229208)
Mol Cancer Ther. 2010 Jun;9(6):1669-79. (PMID: 20484015)
Brief Bioinform. 2008 Jul;9(4):286-98. (PMID: 18372315)
J Comput Biol. 2010 Mar;17(3):337-54. (PMID: 20377449)
Syst Biol. 2010 Oct;59(5):518-33. (PMID: 20656852)
Recent Pat Anticancer Drug Discov. 2007 Jan;2(1):11-29. (PMID: 18221051)
المشرفين على المادة: EC 1.17.4.- (Ribonucleotide Reductases)
EC 1.17.4.- (ribonucleotide reductase R2 subunit)
تواريخ الأحداث: Date Created: 20130919 Date Completed: 20140429 Latest Revision: 20211021
رمز التحديث: 20240628
مُعرف محوري في PubMed: PMC3824934
DOI: 10.1007/s00239-013-9583-y
PMID: 24046025
قاعدة البيانات: MEDLINE
الوصف
تدمد:1432-1432
DOI:10.1007/s00239-013-9583-y