دورية أكاديمية

Genetic-based prediction of disease traits: prediction is very difficult, especially about the future.

التفاصيل البيبلوغرافية
العنوان: Genetic-based prediction of disease traits: prediction is very difficult, especially about the future.
المؤلفون: Schrodi SJ; Center for Human Genetics, Marshfield Clinic Research Foundation Marshfield, WI, USA., Mukherjee S; Department of Medicine, School of Medicine, University of Washington Seattle, WA, USA., Shan Y; Departments of Human Genetics and Biostatistics, Graduate School of Public Health, University of Pittsburgh PA, USA., Tromp G; Sigfried and Janet Weis Center for Research, Geisinger Health System Danville, PA, USA., Sninsky JJ; Subsidiary of Quest Diagnostics, Discovery Research, Celera Corporation Alameda, CA, USA., Callear AP; Center for Human Genetics, Marshfield Clinic Research Foundation Marshfield, WI, USA ; Department of Biological Sciences, University of Pittsburgh Pittsburgh, PA, USA., Carter TC; Center for Human Genetics, Marshfield Clinic Research Foundation Marshfield, WI, USA., Ye Z; Biomedical Informatics Research Center, Marshfield Clinic Research Foundation Marshfield, WI, USA., Haines JL; Department of Epidemiology and Biostatistics, Case Western Reserve School of Medicine Cleveland, OH, USA., Brilliant MH; Center for Human Genetics, Marshfield Clinic Research Foundation Marshfield, WI, USA., Crane PK; Department of Medicine, School of Medicine, University of Washington Seattle, WA, USA., Smelser DT; Sigfried and Janet Weis Center for Research, Geisinger Health System Danville, PA, USA., Elston RC; Department of Epidemiology and Biostatistics, Case Western Reserve School of Medicine Cleveland, OH, USA., Weeks DE; Departments of Human Genetics and Biostatistics, Graduate School of Public Health, University of Pittsburgh PA, USA.
المصدر: Frontiers in genetics [Front Genet] 2014 Jun 02; Vol. 5, pp. 162. Date of Electronic Publication: 2014 Jun 02 (Print Publication: 2014).
نوع المنشور: Journal Article; Review
اللغة: English
بيانات الدورية: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101560621 Publication Model: eCollection Cited Medium: Print ISSN: 1664-8021 (Print) Linking ISSN: 16648021 NLM ISO Abbreviation: Front Genet Subsets: PubMed not MEDLINE
أسماء مطبوعة: Original Publication: Lausanne : Frontiers Research Foundation.
مستخلص: Translation of results from genetic findings to inform medical practice is a highly anticipated goal of human genetics. The aim of this paper is to review and discuss the role of genetics in medically-relevant prediction. Germline genetics presages disease onset and therefore can contribute prognostic signals that augment laboratory tests and clinical features. As such, the impact of genetic-based predictive models on clinical decisions and therapy choice could be profound. However, given that (i) medical traits result from a complex interplay between genetic and environmental factors, (ii) the underlying genetic architectures for susceptibility to common diseases are not well-understood, and (iii) replicable susceptibility alleles, in combination, account for only a moderate amount of disease heritability, there are substantial challenges to constructing and implementing genetic risk prediction models with high utility. In spite of these challenges, concerted progress has continued in this area with an ongoing accumulation of studies that identify disease predisposing genotypes. Several statistical approaches with the aim of predicting disease have been published. Here we summarize the current state of disease susceptibility mapping and pharmacogenetics efforts for risk prediction, describe methods used to construct and evaluate genetic-based predictive models, and discuss applications.
References: PLoS One. 2014 Jan 31;9(1):e87047. (PMID: 24498017)
Nat Genet. 2011 Jun;43(6):519-25. (PMID: 21552263)
J Med Genet. 2012 Sep;49(9):601-8. (PMID: 22972951)
Depress Anxiety. 2013 Mar;30(3):251-8. (PMID: 23280952)
PLoS One. 2013 May 20;8(5):e64307. (PMID: 23700469)
Biostatistics. 2008 Jan;9(1):187-98. (PMID: 17578898)
Eur Radiol. 2013 Feb;23(2):513-20. (PMID: 22875158)
N Engl J Med. 2007 Feb 8;356(6):580-92. (PMID: 17287478)
Am J Hum Genet. 2011 Mar 11;88(3):294-305. (PMID: 21376301)
Nat Biotechnol. 2013 Dec;31(12):1102-10. (PMID: 24270849)
Circulation. 1998 May 12;97(18):1837-47. (PMID: 9603539)
N Engl J Med. 2004 Dec 30;351(27):2817-26. (PMID: 15591335)
Genes Immun. 2013 Apr;14(3):187-91. (PMID: 23392276)
Genet Epidemiol. 2014 Jan;38(1):72-83. (PMID: 24272946)
Annu Rev Biomed Eng. 2007;9:289-320. (PMID: 17391067)
Heart. 2012 Mar;98(5):360-9. (PMID: 22184101)
BJU Int. 2013 Apr;111(4):549-58. (PMID: 22759231)
Eur J Hum Genet. 2013 Jan;21(1):109-11. (PMID: 22669417)
N Engl J Med. 2000 Jul 13;343(2):141-4. (PMID: 10891526)
Genet Epidemiol. 2013 Dec;37(8):768-77. (PMID: 24166696)
Nature. 2001 Dec 13;414(6865):782-7. (PMID: 11742409)
J Vasc Res. 2013;50(4):346-54. (PMID: 23860376)
N Engl J Med. 2010 Jul 8;363(2):166-76. (PMID: 20647212)
Wiley Interdiscip Rev Syst Biol Med. 2013 Jan-Feb;5(1):73-82. (PMID: 23184638)
Genet Epidemiol. 2010 Sep;34(6):624-32. (PMID: 20568294)
PLoS One. 2014 Mar 20;9(3):e92549. (PMID: 24651836)
Am J Hum Genet. 2013 Jun 6;92(6):1008-12. (PMID: 23731541)
Circulation. 2007 Feb 20;115(7):928-35. (PMID: 17309939)
J Clin Oncol. 2014 Jul 1;32(19):2001-9. (PMID: 24733792)
Addict Biol. 2013 Mar;18(2):344-56. (PMID: 22509987)
Cancer Epidemiol Biomarkers Prev. 2013 Apr;22(4):688-96. (PMID: 23377224)
Stat Med. 2008 Jan 30;27(2):157-72; discussion 207-12. (PMID: 17569110)
Nat Genet. 2013 Apr;45(4):433-9, 439e1-2. (PMID: 23455636)
PLoS Genet. 2013;9(7):e1003608. (PMID: 23874214)
N Engl J Med. 2008 Feb 7;358(6):568-79. (PMID: 18256392)
Genet Med. 2013 Oct;15(10):761-71. (PMID: 23743551)
N Engl J Med. 2010 Dec 9;363(24):2339-50. (PMID: 21142536)
Nat Genet. 2010 Nov;42(11):937-48. (PMID: 20935630)
Am J Hum Genet. 2009 Dec;85(6):786-800. (PMID: 19931039)
PLoS Genet. 2009 Feb;5(2):e1000337. (PMID: 19197355)
Lancet Oncol. 2013 Feb;14(2):e60-9. (PMID: 23369684)
Science. 2013 Mar 29;339(6127):1546-58. (PMID: 23539594)
N Engl J Med. 2012 Mar 8;366(10):883-892. (PMID: 22397650)
Cancer. 2013 Feb 15;119(4):792-8. (PMID: 23335114)
Science. 2011 Aug 26;333(6046):1154-7. (PMID: 21798897)
Circ Cardiovasc Genet. 2013 Feb;6(1):19-26. (PMID: 23239831)
Nat Genet. 1997 May;16(1):64-7. (PMID: 9140396)
Nature. 2004 May 27;429(6990):464-8. (PMID: 15164072)
PLoS Genet. 2008 Jun 27;4(6):e1000107. (PMID: 18648537)
Am J Ophthalmol. 2007 Apr;143(4):566-83. (PMID: 17386270)
Circulation. 2010 Nov 30;122(22):2323-34. (PMID: 21147729)
Hum Hered. 2013;76(2):47-52. (PMID: 24107572)
Genet Epidemiol. 2007 Jul;31(5):383-95. (PMID: 17410554)
Lancet. 2010 Oct 23;376(9750):1393-400. (PMID: 20971364)
PLoS One. 2012;7(5):e37979. (PMID: 22666427)
Ann Intern Med. 2006 Jul 4;145(1):21-9. (PMID: 16818925)
BMC Cancer. 2011 Sep 24;11:406. (PMID: 21943394)
Lancet. 2010 Mar 20;375(9719):998-1006. (PMID: 20227758)
N Engl J Med. 2013 Dec 12;369(24):2283-93. (PMID: 24251361)
DNA Cell Biol. 2013 Sep;32(9):549-55. (PMID: 23848218)
Ann Intern Med. 2009 Jun 2;150(11):795-802. (PMID: 19487714)
N Engl J Med. 2011 Nov 3;365(18):1663-72. (PMID: 22047557)
Sci Transl Med. 2012 Oct 3;4(154):154ra135. (PMID: 23035047)
Ophthalmology. 2012 Dec;119(12):2537-48. (PMID: 23084240)
Lancet Neurol. 2009 Dec;8(12):1111-9. (PMID: 19879194)
Genetics. 2013 Oct;195(2):573-87. (PMID: 23934883)
Eur J Clin Invest. 2003 Nov;33 Suppl 2:17-22. (PMID: 14641552)
Genet Epidemiol. 2010 Nov;34(7):643-52. (PMID: 20842684)
N Engl J Med. 2012 Mar 22;366(12):1090-8. (PMID: 22417201)
N Engl J Med. 2013 Oct 24;369(17):1579-81. (PMID: 23991657)
Stroke. 2014 Feb;45(2):394-402. (PMID: 24436234)
Am J Hum Genet. 2004 Aug;75(2):330-7. (PMID: 15208781)
Genes Immun. 2005 Oct;6(7):584-7. (PMID: 16015369)
Lancet. 2008 Jan 5;371(9606):64-74. (PMID: 18177777)
Int J Epidemiol. 2013 Aug;42(4):1134-44. (PMID: 24062299)
Science. 2004 Jun 4;304(5676):1497-500. (PMID: 15118125)
Brief Bioinform. 2012 Jan;13(1):83-97. (PMID: 21422066)
Mol Diagn Ther. 2013 Jun;17(3):165-84. (PMID: 23588782)
PLoS Genet. 2013;9(1):e1003087. (PMID: 23382687)
Nature. 2011 Apr 7;472(7341):90-4. (PMID: 21399628)
Nature. 2009 Aug 6;460(7256):748-52. (PMID: 19571811)
Genet Epidemiol. 2013 Feb;37(2):184-95. (PMID: 23203348)
J Clin Oncol. 1988 Jul;6(7):1076-87. (PMID: 2856862)
Lancet Oncol. 2008 Oct;9(10):962-72. (PMID: 18804418)
Cell. 2012 Mar 2;148(5):886-95. (PMID: 22385958)
Am J Hum Genet. 2004 Sep;75(3):504-7. (PMID: 15273934)
PLoS One. 2014 Mar 24;9(3):e93017. (PMID: 24663104)
Am J Hum Genet. 2003 Mar;72(3):636-49. (PMID: 12592605)
Nature. 2013 Oct 17;502(7471):333-339. (PMID: 24132290)
Am J Epidemiol. 2013 Oct 15;178(8):1197-207. (PMID: 24008910)
Am J Hum Genet. 2005 Apr;76(4):561-71. (PMID: 15719322)
N Engl J Med. 1989 Feb 23;320(8):479-84. (PMID: 2644532)
N Engl J Med. 2004 May 20;350(21):2129-39. (PMID: 15118073)
Am J Public Health. 1985 Oct;75(10):1204-8. (PMID: 3862352)
J Clin Endocrinol Metab. 2004 Nov;89(11):5862-5. (PMID: 15531553)
Nature. 2009 Oct 8;461(7265):747-53. (PMID: 19812666)
J Allergy Clin Immunol. 2013 Jul;132(1):140-50. (PMID: 23810098)
Ann Rheum Dis. 2010 Sep;69(9):1580-8. (PMID: 20699241)
Atheroscler Suppl. 2013 Jan;14(1):73-6. (PMID: 23357145)
Am J Hum Genet. 2010 Apr 9;86(4):560-72. (PMID: 20362271)
Nucleic Acids Res. 2014 Jan;42(Database issue):D1001-6. (PMID: 24316577)
Nat Genet. 2010 Jul;42(7):565-9. (PMID: 20562875)
Nat Genet. 2004 Apr;36(4):337-8. (PMID: 15004560)
Expert Rev Mol Diagn. 2011 Nov;11(8):855-68. (PMID: 22022947)
Nat Rev Genet. 2013 Jul;14(7):507-15. (PMID: 23774735)
Stroke. 2014 Feb;45(2):403-12. (PMID: 24436238)
Br J Cancer. 2009 Aug 18;101(4):715-21. (PMID: 19603018)
Nat Rev Genet. 2013 Apr;14(4):295-300. (PMID: 23478348)
معلومات مُعتمدة: U01 HG006385 United States HG NHGRI NIH HHS; UL1 TR000427 United States TR NCATS NIH HHS; U01 HG006382 United States HG NHGRI NIH HHS; U01 HG004603 United States HG NHGRI NIH HHS; UL1 RR025011 United States RR NCRR NIH HHS; U01 HG006378 United States HG NHGRI NIH HHS; U01 HG004608 United States HG NHGRI NIH HHS; U01 HG006375 United States HG NHGRI NIH HHS; U01 HG004438 United States HG NHGRI NIH HHS
فهرسة مساهمة: Keywords: clinical utility; genetic risk; human genetics; predictive model; prognosis
تواريخ الأحداث: Date Created: 20140612 Date Completed: 20140624 Latest Revision: 20211021
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC4040440
DOI: 10.3389/fgene.2014.00162
PMID: 24917882
قاعدة البيانات: MEDLINE
الوصف
تدمد:1664-8021
DOI:10.3389/fgene.2014.00162