دورية أكاديمية
أعرض في EDS

Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses.

التفاصيل البيبلوغرافية
العنوان: Ribonucleotide reductases reveal novel viral diversity and predict biological and ecological features of unknown marine viruses.
المؤلفون: Sakowski EG; Department of Biological Sciences., Munsell EV; Department of Chemical and Biomolecular Engineering., Hyatt M; Department of Biological Sciences., Kress W; Department of Civil and Environmental Engineering, and., Williamson SJ; Lake Pend Oreille Waterkeeper, Sandpoint, ID 83864;, Nasko DJ; Center for Bioinformatics and Computational Biology, Delaware Biotechnology Institute, University of Delaware, Newark, DE 19716;, Polson SW; Department of Biological Sciences, Center for Bioinformatics and Computational Biology, Delaware Biotechnology Institute, University of Delaware, Newark, DE 19716; Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716; Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711., Wommack KE; Department of Biological Sciences, Delaware Biotechnology Institute, University of Delaware, Newark, DE 19711 Department of Plant and Soil Sciences and College of Earth, Ocean, and Environment, University of Delaware, Newark, DE 19716; and wommack@dbi.udel.edu.
المصدر: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2014 Nov 04; Vol. 111 (44), pp. 15786-91. Date of Electronic Publication: 2014 Oct 13.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
اللغة: English
بيانات الدورية: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Washington, DC : National Academy of Sciences
مواضيع طبية MeSH: Genome, Viral* , Metagenome*, Aquatic Organisms/*genetics , DNA Viruses/*genetics , Ribonucleotide Reductases/*genetics , Viral Proteins/*genetics, Base Sequence ; Biodiversity ; DNA, Single-Stranded/genetics ; DNA, Viral/genetics ; Molecular Sequence Data
مستخلص: Virioplankton play a crucial role in aquatic ecosystems as top-down regulators of bacterial populations and agents of horizontal gene transfer and nutrient cycling. However, the biology and ecology of virioplankton populations in the environment remain poorly understood. Ribonucleotide reductases (RNRs) are ancient enzymes that reduce ribonucleotides to deoxyribonucleotides and thus prime DNA synthesis. Composed of three classes according to O2 reactivity, RNRs can be predictive of the physiological conditions surrounding DNA synthesis. RNRs are universal among cellular life, common within viral genomes and virioplankton shotgun metagenomes (viromes), and estimated to occur within >90% of the dsDNA virioplankton sampled in this study. RNRs occur across diverse viral groups, including all three morphological families of tailed phages, making these genes attractive for studies of viral diversity. Differing patterns in virioplankton diversity were clear from RNRs sampled across a broad oceanic transect. The most abundant RNRs belonged to novel lineages of podoviruses infecting α-proteobacteria, a bacterial class critical to oceanic carbon cycling. RNR class was predictive of phage morphology among cyanophages and RNR distribution frequencies among cyanophages were largely consistent with the predictions of the "kill the winner-cost of resistance" model. RNRs were also identified for the first time to our knowledge within ssDNA viromes. These data indicate that RNR polymorphism provides a means of connecting the biological and ecological features of virioplankton populations.
التعليقات: Comment in: Proc Natl Acad Sci U S A. 2014 Nov 4;111(44):15606-7. (PMID: 25349391)
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معلومات مُعتمدة: P20 GM103446 United States GM NIGMS NIH HHS; T32 GM008550 United States GM NIGMS NIH HHS
فهرسة مساهمة: Keywords: phage replication; viral ecology; viral evolution
سلسلة جزيئية: GENBANK KM520158; KM520159; KM520160; KM520161; KM520162; KM520163; KM520164; KM520165; KM520166; KM520167; KM520168; KM520169; KM520170; KM520171; KM520172; KM520173; KM520174; KM520175; KM520176; KM520177; KM520178; KM520179; KM520180; KM520181; KM520182; KM520183; KM520184; KM520185; KM520186; KM520187; KM520188; KM520189; KM520190; KM520191; KM520192; KM520193; KM520194; KM520195; KM520196; KM520197; KM520198; KM520199; KM520200; KM520201; KM520202; KM520203; KM520204; KM520205; KM520206; KM520207; KM520208; KM520209; KM520210; KM520211; KM520212; KM520213; KM520214; KM520215; KM520216; KM520217; KM520218; KM520219; KM520220; KM520221; KM520222; KM520223; KM520224; KM520225; KM520226; KM520227; KM520228; KM520229; KM520230; KM520231; KM520232; KM520233; KM520234; KM520235; KM520236; KM520237; KM520238; KM520239; KM520240; KM520241; KM520242; KM520243; KM520244; KM520245; KM520246; KM520247; KM520248; KM520249; KM520250; KM520251; KM520252; KM520253; KM520254; KM520255; KM520256; KM520257; KM520258; KM520259; KM520260; KM520261; KM520262; KM520263; KM520264; KM520265; KM520266; KM520267; KM520268; KM520269; KM520270; KM520271; KM520272; KM520273; KM520274; KM520275; KM520276; KM520277; KM520278; KM520279; KM520280; KM520281; KM520282; KM520283; KM520284; KM520285; KM520286; KM520287; KM520288; KM520289; KM520290; KM520291; KM520292; KM520293; KM520294; KM520295; KM520296; KM520297; KM520298; KM520299; KM520300; KM520301; KM520302; KM520303; KM520304; KM520305; KM520306; KM520307; KM520308; KM520309; KM520310; KM520311; KM520312; KM520313; KM520314; KM520315; KM520316; KM520317; KM520318; KM520319; KM520320; KM520321; KM520322; KM520323; KM520324; KM520325; KM520326; KM520327; KM520328; KM520329; KM520330; KM520331; KM520332; KM520333; KM520334; KM520335
المشرفين على المادة: 0 (DNA, Single-Stranded)
0 (DNA, Viral)
0 (Viral Proteins)
EC 1.17.4.- (Ribonucleotide Reductases)
تواريخ الأحداث: Date Created: 20141015 Date Completed: 20150414 Latest Revision: 20211021
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC4226130
DOI: 10.1073/pnas.1401322111
PMID: 25313075
قاعدة البيانات: MEDLINE
الوصف
تدمد:1091-6490
DOI:10.1073/pnas.1401322111