دورية أكاديمية
Finding our way through phenotypes.
| العنوان: | Finding our way through phenotypes. |
|---|---|
| المؤلفون: | Deans AR; Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, United States of America., Lewis SE; Genome Division, Lawrence Berkeley National Lab, Berkeley, California, United States of America., Huala E; Department of Plant Biology, Carnegie Institution for Science, Stanford, California, United States of America; Phoenix Bioinformatics, Palo Alto, California, United States of America., Anzaldo SS; School of Life Sciences, Arizona State University, Tempe, Arizona, United States of America., Ashburner M; Department of Genetics, University of Cambridge, Cambridge, United Kingdom., Balhoff JP; National Evolutionary Synthesis Center, Durham, North Carolina, United States of America., Blackburn DC; Department of Vertebrate Zoology and Anthropology, California Academy of Sciences, San Francisco, California, United States of America., Blake JA; The Jackson Laboratory, Bar Harbor, Maine, United States of America., Burleigh JG; Department of Biology, University of Florida, Gainesville, Florida, United States of America., Chanet B; Muséum national d'Histoire naturelle, Département Systématique et Evolution, Paris, France., Cooper LD; Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America., Courtot M; Molecular Biology and Biochemistry Department, Simon Fraser University, Burnaby, British Columbia, Canada., Csösz S; MTA-ELTE-MTM, Ecology Research Group, Pázmány Péter sétány 1C, Budapest, Hungary., Cui H; School of Information Resources and Library Science, University of Arizona, Tucson, Arizona, United States of America., Dahdul W; Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America., Das S; Department of Botany, University of Delhi, Delhi, India., Dececchi TA; Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America., Dettai A; Muséum national d'Histoire naturelle, Département Systématique et Evolution, Paris, France., Diogo R; Department of Anatomy, Howard University College of Medicine, Washington D.C., United States of America., Druzinsky RE; Department of Oral Biology, College of Dentistry, University of Illinois, Chicago, Illinois, United States of America., Dumontier M; Stanford Center for Biomedical Informatics Research, Stanford, California, United States of America., Franz NM; School of Life Sciences, Arizona State University, Tempe, Arizona, United States of America., Friedrich F; Biocenter Grindel and Zoological Museum, Hamburg University, Hamburg, Germany., Gkoutos GV; Department of Computer Science, Aberystwyth University, Aberystwyth, Ceredigion, United Kingdom., Haendel M; Department of Medical Informatics & Epidemiology, Oregon Health & Science University, Portland, Oregon, United States of America., Harmon LJ; Department of Biological Sciences, University of Idaho, Moscow, Idaho, United States of America., Hayamizu TF; Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, Maine, United States of America., He Y; Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, and Comprehensive Cancer Center, University of Michigan Medical School, Ann Arbor, Michigan, United States of America., Hines HM; Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, United States of America., Ibrahim N; Department of Organismal Biology and Anatomy, University of Chicago, Chicago, Illinois, United States of America., Jackson LM; Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America., Jaiswal P; Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America., James-Zorn C; Cincinnati Children's Hospital, Division of Developmental Biology, Cincinnati, Ohio, United States of America., Köhler S; Institute for Medical Genetics and Human Genetics, Charité-Universitätsmedizin Berlin, Berlin, Germany., Lecointre G; Muséum national d'Histoire naturelle, Département Systématique et Evolution, Paris, France., Lapp H; National Evolutionary Synthesis Center, Durham, North Carolina, United States of America., Lawrence CJ; Department of Genetics, Development and Cell Biology and Department of Agronomy, Iowa State University, Ames, Iowa, United States of America., Le Novère N; Signalling ISP, Babraham Institute, Babraham, Cambridgeshire, UK., Lundberg JG; Department of Ichthyology, The Academy of Natural Sciences, Philadelphia, Pennsylvania, United States of America., Macklin J; Eastern Cereal and Oilseed Research Centre, Ottawa, Ontario, Canada., Mast AR; Department of Biological Science, Florida State University, Tallahassee, Florida, United States of America., Midford PE; Richmond, Virginia, United States of America., Mikó I; Department of Entomology, Pennsylvania State University, University Park, Pennsylvania, United States of America., Mungall CJ; Genome Division, Lawrence Berkeley National Lab, Berkeley, California, United States of America., Oellrich A; European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom., Osumi-Sutherland D; European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom., Parkinson H; European Molecular Biology Laboratory - European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, United Kingdom., Ramírez MJ; Division of Arachnology, Museo Argentino de Ciencias Naturales - CONICET, Buenos Aires, Argentina., Richter S; Allgemeine & Spezielle Zoologie, Institut für Biowissenschaften, Universität Rostock, Universitätsplatz 2, Rostock, Germany., Robinson PN; Institut für Medizinische Genetik und Humangenetik Charité - Universitätsmedizin Berlin, Berlin, Germany., Ruttenberg A; School of Dental Medicine, University at Buffalo, Buffalo, New York, United States of America., Schulz KS; Smithsonian Institution, National Museum of Natural History, Washington, D.C., United States of America., Segerdell E; Knight Cancer Institute, Oregon Health & Science University, Portland, Oregon, United States of America., Seltmann KC; Division of Invertebrate Zoology, American Museum of Natural History, New York, New York, United States of America., Sharkey MJ; Department of Entomology, University of Kentucky, Lexington, Kentucky, United States of America., Smith AD; Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, United States of America., Smith B; Department of Philosophy, University at Buffalo, Buffalo, New York, United States of America., Specht CD; Department of Plant and Microbial Biology, Integrative Biology, and the University and Jepson Herbaria, University of California, Berkeley, California, United States of America., Squires RB; Bioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, United States of America., Thacker RW; Department of Biology, University of Alabama at Birmingham, Birmingham, Alabama, United States of America., Thessen A; The Data Detektiv, 1412 Stearns Hill Road, Waltham, Massachusetts, United States of America., Fernandez-Triana J; Canadian National Collection of Insects, Ottawa, Ontario, Canada., Vihinen M; Department of Experimental Medical Science, Lund University, Lund, Sweden., Vize PD; Department of Biological Sciences, University of Calgary, Calgary, Alberta, Canada., Vogt L; Universität Bonn, Institut für Evolutionsbiologie und Ökologie, Bonn, Germany., Wall CE; Department of Evolutionary Anthropology, Duke University, Durham, North Carolina, United States of America., Walls RL; iPlant Collaborative University of Arizona, Thomas J. Keating Bioresearch Building, Tucson, Arizona, United States of America., Westerfeld M; Institute of Neuroscience, University of Oregon, Eugene, Oregon, United States of America., Wharton RA; Department of Entomology, Texas A & M University, College, Station, Texas, United States of America., Wirkner CS; Allgemeine & Spezielle Zoologie, Institut für Biowissenschaften, Universität Rostock, Universitätsplatz 2, Rostock, Germany., Woolley JB; Department of Entomology, Texas A & M University, College, Station, Texas, United States of America., Yoder MJ; Illinois Natural History Survey, University of Illinois, Champaign, Illinois, United States of America., Zorn AM; Cincinnati Children's Hospital, Division of Developmental Biology, Cincinnati, Ohio, United States of America., Mabee P; Department of Biology, University of South Dakota, Vermillion, South Dakota, United States of America. |
| المصدر: | PLoS biology [PLoS Biol] 2015 Jan 06; Vol. 13 (1), pp. e1002033. Date of Electronic Publication: 2015 Jan 06 (Print Publication: 2015). |
| نوع المنشور: | Journal Article; Research Support, U.S. Gov't, Non-P.H.S. |
| اللغة: | English |
| بيانات الدورية: | Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE |
| أسماء مطبوعة: | Original Publication: San Francisco, CA : Public Library of Science, [2003]- |
| مواضيع طبية MeSH: | Genetic Association Studies*, Animals ; Computational Biology ; Data Curation ; Databases, Factual/standards ; Gene-Environment Interaction ; Genomics ; Humans ; Phenotype ; Reference Standards ; Reproducibility of Results ; Terminology as Topic |
| مستخلص: | Despite a large and multifaceted effort to understand the vast landscape of phenotypic data, their current form inhibits productive data analysis. The lack of a community-wide, consensus-based, human- and machine-interpretable language for describing phenotypes and their genomic and environmental contexts is perhaps the most pressing scientific bottleneck to integration across many key fields in biology, including genomics, systems biology, development, medicine, evolution, ecology, and systematics. Here we survey the current phenomics landscape, including data resources and handling, and the progress that has been made to accurately capture relevant data descriptions for phenotypes. We present an example of the kind of integration across domains that computable phenotypes would enable, and we call upon the broader biology community, publishers, and relevant funding agencies to support efforts to surmount today's data barriers and facilitate analytical reproducibility. |
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| معلومات مُعتمدة: | BBS/E/B/000C0419 United Kingdom BB_ Biotechnology and Biological Sciences Research Council; P30 CA034196 United States CA NCI NIH HHS; P41 HD064556 United States HD NICHD NIH HHS; U41 HG000330 United States HG NHGRI NIH HHS |
| تواريخ الأحداث: | Date Created: 20150107 Date Completed: 20160429 Latest Revision: 20240324 |
| رمز التحديث: | 20240324 |
| مُعرف محوري في PubMed: | PMC4285398 |
| DOI: | 10.1371/journal.pbio.1002033 |
| PMID: | 25562316 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1545-7885 |
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| DOI: | 10.1371/journal.pbio.1002033 |