دورية أكاديمية
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Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays.

التفاصيل البيبلوغرافية
العنوان: Expanding the repertoire of secretory peptides controlling root development with comparative genome analysis and functional assays.
المؤلفون: Ghorbani S; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium., Lin YC; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium., Parizot B; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium., Fernandez A; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium., Njo MF; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium., Van de Peer Y; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium Genomics Research Institute, University of Pretoria, Hatfield Campus, Pretoria 0028, South Africa., Beeckman T; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium., Hilson P; Department of Plant Systems Biology, VIB, 9052 Ghent, Belgium Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium Institut Jean-Pierre Bourgin, INRA, AgroParisTech, CNRS, Université Paris-Saclay, Saclay Plant Sciences, INRA, route de Saint-Cyr, 78026 Versailles, France pierre.hilson@versailles.inra.fr.
المصدر: Journal of experimental botany [J Exp Bot] 2015 Aug; Vol. 66 (17), pp. 5257-69. Date of Electronic Publication: 2015 Jul 20.
نوع المنشور: Journal Article; Research Support, Non-U.S. Gov't
اللغة: English
بيانات الدورية: Publisher: Oxford University Press Country of Publication: England NLM ID: 9882906 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1460-2431 (Electronic) Linking ISSN: 00220957 NLM ISO Abbreviation: J Exp Bot Subsets: MEDLINE
أسماء مطبوعة: Original Publication: Oxford, UK : Oxford University Press,
مواضيع طبية MeSH: Genome, Plant*, Genomics/*methods , Peptides/*genetics , Plant Development/*genetics , Plant Proteins/*genetics, Conserved Sequence ; Gene Expression Profiling ; Microsatellite Repeats ; Peptides/metabolism ; Phylogeny ; Plant Proteins/metabolism ; Plant Roots/genetics ; Plant Roots/growth & development
مستخلص: Plant genomes encode numerous small secretory peptides (SSPs) whose functions have yet to be explored. Based on structural features that characterize SSP families known to take part in postembryonic development, this comparative genome analysis resulted in the identification of genes coding for oligopeptides potentially involved in cell-to-cell communication. Because genome annotation based on short sequence homology is difficult, the criteria for the de novo identification and aggregation of conserved SSP sequences were first benchmarked across five reference plant species. The resulting gene families were then extended to 32 genome sequences, including major crops. The global phylogenetic pattern common to the functionally characterized SSP families suggests that their apparition and expansion coincide with that of the land plants. The SSP families can be searched online for members, sequences and consensus (http://bioinformatics.psb.ugent.be/webtools/PlantSSP/). Looking for putative regulators of root development, Arabidopsis thaliana SSP genes were further selected through transcriptome meta-analysis based on their expression at specific stages and in specific cell types in the course of the lateral root formation. As an additional indication that formerly uncharacterized SSPs may control development, this study showed that root growth and branching were altered by the application of synthetic peptides matching conserved SSP motifs, sometimes in very specific ways. The strategy used in the study, combining comparative genomics, transcriptome meta-analysis and peptide functional assays in planta, pinpoints factors potentially involved in non-cell-autonomous regulatory mechanisms. A similar approach can be implemented in different species for the study of a wide range of developmental programmes.
(© The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.)
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فهرسة مساهمة: Keywords: Crops; genome annotation; meta-analysis; plant development; signalling peptide.
المشرفين على المادة: 0 (Peptides)
0 (Plant Proteins)
تواريخ الأحداث: Date Created: 20150722 Date Completed: 20160524 Latest Revision: 20240518
رمز التحديث: 20240518
مُعرف محوري في PubMed: PMC4526923
DOI: 10.1093/jxb/erv346
PMID: 26195730
قاعدة البيانات: MEDLINE
الوصف
تدمد:1460-2431
DOI:10.1093/jxb/erv346