دورية أكاديمية
أعرض في EDS

Minimum information for reporting next generation sequence genotyping (MIRING): Guidelines for reporting HLA and KIR genotyping via next generation sequencing.

التفاصيل البيبلوغرافية
العنوان: Minimum information for reporting next generation sequence genotyping (MIRING): Guidelines for reporting HLA and KIR genotyping via next generation sequencing.
المؤلفون: Mack SJ; Children's Hospital Oakland Research Institute, Oakland, CA, USA. Electronic address: SJMACK@CHORI.ORG., Milius RP; National Marrow Donor Program, Minneapolis, MN, USA., Gifford BD; One Lambda, Thermo Fisher Scientific, Brown Deer, WI, USA., Sauter J; DKMS German Bone Marrow Donor Center, Tübingen, Germany., Hofmann J; DKMS German Bone Marrow Donor Center, Tübingen, Germany., Osoegawa K; Department of Pathology, Stanford University, Stanford, CA, USA., Robinson J; Anthony Nolan Research Institute, Royal Free Hospital, London, UK; University College London Cancer Institute, University College London, London, UK., Groeneweg M; Maastricht University Medical Centre, Maastricht, The Netherlands., Turenchalk GS; Bioinformatics, Roche Sequencing, Pleasanton, CA, USA., Adai A; Bioinformatics, Roche Sequencing, Pleasanton, CA, USA., Holcomb C; Roche Molecular Systems, Pleasanton, CA, USA., Rozemuller EH; GenDX, Utrecht, The Netherlands., Penning MT; GenDX, Utrecht, The Netherlands., Heuer ML; National Marrow Donor Program, Minneapolis, MN, USA., Wang C; Stanford Genome Technology Center, Stanford University, Stanford, CA, USA., Salit ML; National Institute of Standards and Technology, Stanford, CA, USA; Department of Bioengineering, Stanford University, Stanford, CA, USA., Schmidt AH; DKMS German Bone Marrow Donor Center, Tübingen, Germany., Parham PR; Department of Structural Biology, Stanford University, Stanford, CA, USA., Müller C; Zentrales Knochenmarkspender-Register Deutschland, Ulm, Germany., Hague T; Omixon, Budapest, Hungary., Fischer G; Medical University of Vienna, Vienna, Austria., Fernandez-Viňa M; Department of Pathology, Stanford University, Stanford, CA, USA., Hollenbach JA; Department of Neurology, University of California, San Francisco, CA, USA., Norman PJ; Department of Structural Biology, Stanford University, Stanford, CA, USA., Maiers M; National Marrow Donor Program, Minneapolis, MN, USA.
المصدر: Human immunology [Hum Immunol] 2015 Dec; Vol. 76 (12), pp. 954-62. Date of Electronic Publication: 2015 Sep 25.
نوع المنشور: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
اللغة: English
بيانات الدورية: Publisher: Elsevier/North-Holland Country of Publication: United States NLM ID: 8010936 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-1166 (Electronic) Linking ISSN: 01988859 NLM ISO Abbreviation: Hum Immunol Subsets: MEDLINE
أسماء مطبوعة: Original Publication: [New York] Elsevier/North-Holland.
مواضيع طبية MeSH: Genotyping Techniques* , Histocompatibility Testing* , Research Report*/standards, HLA Antigens/*genetics , High-Throughput Nucleotide Sequencing/*methods , Potassium Channels, Inwardly Rectifying/*genetics, Guidelines as Topic ; High-Throughput Nucleotide Sequencing/standards ; Humans
مستخلص: The development of next-generation sequencing (NGS) technologies for HLA and KIR genotyping is rapidly advancing knowledge of genetic variation of these highly polymorphic loci. NGS genotyping is poised to replace older methods for clinical use, but standard methods for reporting and exchanging these new, high quality genotype data are needed. The Immunogenomic NGS Consortium, a broad collaboration of histocompatibility and immunogenetics clinicians, researchers, instrument manufacturers and software developers, has developed the Minimum Information for Reporting Immunogenomic NGS Genotyping (MIRING) reporting guidelines. MIRING is a checklist that specifies the content of NGS genotyping results as well as a set of messaging guidelines for reporting the results. A MIRING message includes five categories of structured information - message annotation, reference context, full genotype, consensus sequence and novel polymorphism - and references to three categories of accessory information - NGS platform documentation, read processing documentation and primary data. These eight categories of information ensure the long-term portability and broad application of this NGS data for all current histocompatibility and immunogenetics use cases. In addition, MIRING can be extended to allow the reporting of genotype data generated using pre-NGS technologies. Because genotyping results reported using MIRING are easily updated in accordance with reference and nomenclature databases, MIRING represents a bold departure from previous methods of reporting HLA and KIR genotyping results, which have provided static and less-portable data. More information about MIRING can be found online at miring.immunogenomics.org.
(Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.)
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معلومات مُعتمدة: P01 HG000205 United States HG NHGRI NIH HHS; U01AI090905 United States AI NIAID NIH HHS; U01 AI090905 United States AI NIAID NIH HHS; R01GM109030 United States GM NIGMS NIH HHS; U01 AI067068 United States AI NIAID NIH HHS; U01AI067068 United States AI NIAID NIH HHS; R01 GM109030 United States GM NIGMS NIH HHS
فهرسة مساهمة: Keywords: Data standards; Genotyping; HLA; KIR; MIRING; NGS
المشرفين على المادة: 0 (HLA Antigens)
0 (Potassium Channels, Inwardly Rectifying)
تواريخ الأحداث: Date Created: 20150927 Date Completed: 20160915 Latest Revision: 20181113
رمز التحديث: 20231215
مُعرف محوري في PubMed: PMC4674382
DOI: 10.1016/j.humimm.2015.09.011
PMID: 26407912
قاعدة البيانات: MEDLINE
الوصف
تدمد:1879-1166
DOI:10.1016/j.humimm.2015.09.011