دورية أكاديمية
A Study of Applicability of SNP Chips Developed for Bovine and Ovine Species to Whole-Genome Analysis of Reindeer Rangifer tarandus.
| العنوان: | A Study of Applicability of SNP Chips Developed for Bovine and Ovine Species to Whole-Genome Analysis of Reindeer Rangifer tarandus. |
|---|---|
| المؤلفون: | Kharzinova VR; From the L.K. Ernst Institute for Animal Husbandry, Dubrovitzy Estate, 60, Podolsk district, Moscow region, Podolsk 142132, Russia (Kharzinova, Sermyagin, Gladyr, Brem, and Zinovieva); Science Institute of Biological Problems Cryolithozone, Yakutsk 677980, Russia (Okhlopkov); and Institute for Animal Breeding and Genetics, VMU, A-1210 Vienna, Austria (Brem). veronika0784@mail.ru., Sermyagin AA; From the L.K. Ernst Institute for Animal Husbandry, Dubrovitzy Estate, 60, Podolsk district, Moscow region, Podolsk 142132, Russia (Kharzinova, Sermyagin, Gladyr, Brem, and Zinovieva); Science Institute of Biological Problems Cryolithozone, Yakutsk 677980, Russia (Okhlopkov); and Institute for Animal Breeding and Genetics, VMU, A-1210 Vienna, Austria (Brem)., Gladyr EA; From the L.K. Ernst Institute for Animal Husbandry, Dubrovitzy Estate, 60, Podolsk district, Moscow region, Podolsk 142132, Russia (Kharzinova, Sermyagin, Gladyr, Brem, and Zinovieva); Science Institute of Biological Problems Cryolithozone, Yakutsk 677980, Russia (Okhlopkov); and Institute for Animal Breeding and Genetics, VMU, A-1210 Vienna, Austria (Brem)., Okhlopkov IM; From the L.K. Ernst Institute for Animal Husbandry, Dubrovitzy Estate, 60, Podolsk district, Moscow region, Podolsk 142132, Russia (Kharzinova, Sermyagin, Gladyr, Brem, and Zinovieva); Science Institute of Biological Problems Cryolithozone, Yakutsk 677980, Russia (Okhlopkov); and Institute for Animal Breeding and Genetics, VMU, A-1210 Vienna, Austria (Brem)., Brem G; From the L.K. Ernst Institute for Animal Husbandry, Dubrovitzy Estate, 60, Podolsk district, Moscow region, Podolsk 142132, Russia (Kharzinova, Sermyagin, Gladyr, Brem, and Zinovieva); Science Institute of Biological Problems Cryolithozone, Yakutsk 677980, Russia (Okhlopkov); and Institute for Animal Breeding and Genetics, VMU, A-1210 Vienna, Austria (Brem)., Zinovieva NA; From the L.K. Ernst Institute for Animal Husbandry, Dubrovitzy Estate, 60, Podolsk district, Moscow region, Podolsk 142132, Russia (Kharzinova, Sermyagin, Gladyr, Brem, and Zinovieva); Science Institute of Biological Problems Cryolithozone, Yakutsk 677980, Russia (Okhlopkov); and Institute for Animal Breeding and Genetics, VMU, A-1210 Vienna, Austria (Brem). |
| المصدر: | The Journal of heredity [J Hered] 2015 Nov-Dec; Vol. 106 (6), pp. 758-61. Date of Electronic Publication: 2015 Oct 07. |
| نوع المنشور: | Journal Article; Research Support, Non-U.S. Gov't |
| اللغة: | English |
| بيانات الدورية: | Publisher: Oxford University Press For The American Genetic Association Country of Publication: United States NLM ID: 0375373 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1465-7333 (Electronic) Linking ISSN: 00221503 NLM ISO Abbreviation: J Hered Subsets: MEDLINE |
| أسماء مطبوعة: | Publication: New York, NY : Oxford University Press For The American Genetic Association Original Publication: Baltimore [etc.] American Genetic Assn. |
| مواضيع طبية MeSH: | Oligonucleotide Array Sequence Analysis* , Polymorphism, Single Nucleotide*, Genomics/*methods , Reindeer/*genetics, Animals ; Cattle ; Genotyping Techniques ; Sheep ; Species Specificity |
| مستخلص: | Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. (© The American Genetic Association. 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.) |
| التعليقات: | Comment in: J Hered. 2016 Mar;107(2):193-5. (PMID: 26774056) Comment in: J Hered. 2016 Mar;107(2):196-7. (PMID: 26809969) |
| فهرسة مساهمة: | Keywords: SNP; reindeer Rangifer tarandus; whole-genome analysis |
| سلسلة جزيئية: | Dryad 10.5061/dryad.29FP0 |
| تواريخ الأحداث: | Date Created: 20151009 Date Completed: 20160411 Latest Revision: 20170510 |
| رمز التحديث: | 20231215 |
| DOI: | 10.1093/jhered/esv081 |
| PMID: | 26447215 |
| قاعدة البيانات: | MEDLINE |
Full Text Finder | تدمد: | 1465-7333 |
|---|---|
| DOI: | 10.1093/jhered/esv081 |